PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0093071

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 343aa MW: 37208.6 Da PI: 10.0376

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0093071	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.1	1e-13	121	165	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ I+r ++Rt+ q+ s+ qky RcHm_v2.0_Chr2g0093071 121 PWTEEEHRTFLMGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKY 165 8*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MGRKCSHCGN MGHNSRTCTN FRGSSTAGFV GTTPHGFRLF GVQVHHHDHM SSSVSSFNAM 60 DMMMKKSFSM DCLPTSSASS SSPSSSRISI DNENSDHHKA SIGYVSDGLI CRAQDRKKGV 120 PWTEEEHRTF LMGLEKLGKG DWRGISRNYV TTRTPTQVAS HAQKYFLRQA TLTKKKRRSS 180 LFDMFGSNGR NPQSQPSSID QAHCVNNIPT TPQSQSNIQL QLSTTTTSAA QNLKPSVHQQ 240 KPADYSSSTP PLGSIRDPDR AMPGWIYGLI DSQLKYSNAA SSSKPSTSNI PPPPPPPSVV 300 PDHLELTLAA PVVRPLDLDQ NRSSSSSSPT SGPLLNIGPI SVT

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MGRKCSHCGN MGHNSRTCTN FRGSSTAGFV GTTPHGFRLF GVQVHHHDHM SSSVSSFNAM  60
DMMMKKSFSM DCLPTSSASS SSPSSSRISI DNENSDHHKA SIGYVSDGLI CRAQDRKKGV  120
PWTEEEHRTF LMGLEKLGKG DWRGISRNYV TTRTPTQVAS HAQKYFLRQA TLTKKKRRSS  180
LFDMFGSNGR NPQSQPSSID QAHCVNNIPT TPQSQSNIQL QLSTTTTSAA QNLKPSVHQQ  240
KPADYSSSTP PLGSIRDPDR AMPGWIYGLI DSQLKYSNAA SSSKPSTSNI PPPPPPPSVV  300
PDHLELTLAA PVVRPLDLDQ NRSSSSSSPT SGPLLNIGPI SVT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	174	178	KKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56840.1	1e-49	MYB_related family protein