PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0092411

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 314aa MW: 35315.7 Da PI: 6.8753

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0092411	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.4	2.6e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l+++ +++G+ +W t + + g++R++k+c++rw++yl RcHm_v2.0_Chr2g0092411 14 RGPWSPEEDATLKNYLHEHGTTgNWITLPTKAGLNRCGKSCRLRWLNYL 62 89*****************9***********************97 PP
2	Myb_DNA-binding	34.5	4.9e-11	68	152	1	46
TSSS-HHHHHHHHHHHHHTTTT........................................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg........................................tWktIartmgkgRtlkqcksrwqk 46 rg +T+eEd + +++ G++ +W+ Ia+ ++ gRt++++k++w++ RcHm_v2.0_Chr2g0092411 68 RGTFTEEEDNVICTLFRSIGSRqvndygthiwyqyyrfcynvvllgcpsqeliiyvslcfgiRWSVIASQLP-GRTDNDVKNYWNT 152 899*******************************************************************.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence
MGRAPCCDKS KVKRGPWSPE EDATLKNYLH EHGTTGNWIT LPTKAGLNRC GKSCRLRWLN 60 YLRPDIKRGT FTEEEDNVIC TLFRSIGSRQ VNDYGTHIWY QYYRFCYNVV LLGCPSQELI 120 IYVSLCFGIR WSVIASQLPG RTDNDVKNYW NTKLKKKLLA VAARNNIVAT RQTCDHNIAD 180 QFSAPVPPKI ETPHGPETSS CLGGTLPYAA NISLVHSFDQ PKETFEPWCN HSDSKPMEVS 240 DFGSTSESNS FSIPLSHQEV SSLPSSSSLA QLDQYHCSLW SGHEGINYVN SEFLMDFGFE 300 TPPADQFLLG GYGH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36890.1	4e-55	MYB family protein