PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0089991

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

CPP

Protein Properties

Length: 597aa MW: 63212.1 Da PI: 7.9926

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0089991	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	41.9	2e-13	117	156	2	42
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnCk+s+Clk+YCeCfa+g +C+ C+C +C+N+ e+ RcHm_v2.0_Chr2g0089991 117 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCVNCCNNVEN 156 89************************.******9875 PP
2	TCR	51	2.8e-16	201	240	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e RcHm_v2.0_Chr2g0089991 201 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCIDCKNFE 240 589***********************************65 PP

Sequence ? help Back to Top
Protein Sequence Length: 597 aa Download sequence
MGEGDGADSA PKKPQSDAVT AGATTSSGDV PAKKLARQLD FTGFGATTSG SVALPEPPKP 60 QLQTVTVPQS QPKPQVVGVP VPVPPQPPVP SVRPVKPDSP KSRPRPNVDG KDGTPKKQKQ 120 CNCKHSRCLK LYCECFASGI YCDGCNCVNC CNNVENEGAR RDAVEATLER NPNAFRPKIA 180 SSPHGPRDSR EEAGELVVLA KHNKGCHCKK SGCLKKYCEC FQANILCSEN CKCIDCKNFE 240 GSEERQALFH GDHSNNMAYL QQAANAAITG AIGSSGYISS PPVSKKRKGQ ELFFGQTGKD 300 PSAHRIGQFP QANHLRPPAP SSSSVPVARL GTAGLGPSKF TYRSLLADII QPQDLKELCS 360 VLVVVAEEAA KTLADRKNAA EKQAEYQTEA SLATTTEDRL QSQKESDTQK AVTDDCSTAN 420 QADKISPEDS NSDGVDGPKG RPMSPGTLAL MCDEQDTMFM SAASPNRLMG DGCNTSSQLP 480 NGQGMSEVYA EQERIVLAKF RGCLNMLITR GELKEAECSS LARSEAAAQR EQVGNGTPNP 540 RTETGSQQGP ISNGVAKTAV PPTARTSQIV TAAVLSPSTV LPKPPSVPEN GGNKPKA

Sequence ? help Back to Top

Protein Sequence Length: 597 aa Download sequence

MGEGDGADSA PKKPQSDAVT AGATTSSGDV PAKKLARQLD FTGFGATTSG SVALPEPPKP  60
QLQTVTVPQS QPKPQVVGVP VPVPPQPPVP SVRPVKPDSP KSRPRPNVDG KDGTPKKQKQ  120
CNCKHSRCLK LYCECFASGI YCDGCNCVNC CNNVENEGAR RDAVEATLER NPNAFRPKIA  180
SSPHGPRDSR EEAGELVVLA KHNKGCHCKK SGCLKKYCEC FQANILCSEN CKCIDCKNFE  240
GSEERQALFH GDHSNNMAYL QQAANAAITG AIGSSGYISS PPVSKKRKGQ ELFFGQTGKD  300
PSAHRIGQFP QANHLRPPAP SSSSVPVARL GTAGLGPSKF TYRSLLADII QPQDLKELCS  360
VLVVVAEEAA KTLADRKNAA EKQAEYQTEA SLATTTEDRL QSQKESDTQK AVTDDCSTAN  420
QADKISPEDS NSDGVDGPKG RPMSPGTLAL MCDEQDTMFM SAASPNRLMG DGCNTSSQLP  480
NGQGMSEVYA EQERIVLAKF RGCLNMLITR GELKEAECSS LARSEAAAQR EQVGNGTPNP  540
RTETGSQQGP ISNGVAKTAV PPTARTSQIV TAAVLSPSTV LPKPPSVPEN GGNKPKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	0.0	CPP family protein