PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0086661

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TALE

Protein Properties

Length: 434aa MW: 49331.6 Da PI: 6.7981

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0086661	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23.4	1e-07	372	405	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + RcHm_v2.0_Chr2g0086661 372 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 405 469*****************************87 PP
2	ELK	28.8	2.8e-10	326	347	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ RcHm_v2.0_Chr2g0086661 326 ELKHELKQGYKEKIVDIREEIL 347 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MSSPPRVDLS PPSDPPHPPR YRRQPVIIII TLNSETKVVP LPKKSFGFLS SPPLSALLAF 60 LNRAFPHELK KCFSFQPRKI SKPQMAFHHH QTPHEMAFHG SFPDTQQPPQ LAPTWLNAPP 120 FRSQNSFSRN DDVVISPSGK SGDRGGEEDE EDELECESGR FKADIVGHPL YEQLVSAHVS 180 CLRIATPVDQ LPKIDEQLVQ SQRVVDKYSA MRANGDFQVM DEKELDSFMT NYVLLLCSFK 240 EQLQQHVRVH AMEAVMACWE LEQSLQSLTG VSTAEGTGAT MSDDDEQFDS DINSYDASLD 300 GHDTMGFGPL VPTESERSLM ERVRQELKHE LKQGYKEKIV DIREEILRKR RAGKLPGDTT 360 SVLKAWWQSH SKWPYPTEED KARLVQETGL QLKQINNWFI NQRKRNWHSN LSTTSVLKSK 420 RKSNAGDGNT QQFK

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MSSPPRVDLS PPSDPPHPPR YRRQPVIIII TLNSETKVVP LPKKSFGFLS SPPLSALLAF  60
LNRAFPHELK KCFSFQPRKI SKPQMAFHHH QTPHEMAFHG SFPDTQQPPQ LAPTWLNAPP  120
FRSQNSFSRN DDVVISPSGK SGDRGGEEDE EDELECESGR FKADIVGHPL YEQLVSAHVS  180
CLRIATPVDQ LPKIDEQLVQ SQRVVDKYSA MRANGDFQVM DEKELDSFMT NYVLLLCSFK  240
EQLQQHVRVH AMEAVMACWE LEQSLQSLTG VSTAEGTGAT MSDDDEQFDS DINSYDASLD  300
GHDTMGFGPL VPTESERSLM ERVRQELKHE LKQGYKEKIV DIREEILRKR RAGKLPGDTT  360
SVLKAWWQSH SKWPYPTEED KARLVQETGL QLKQINNWFI NQRKRNWHSN LSTTSVLKSK  420
RKSNAGDGNT QQFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25220.1	1e-162	TALE family protein