PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0086131
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARR-B
Protein Properties Length: 682aa    MW: 75178.9 Da    PI: 6.0226
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0086131genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.69.9e-27200253155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             kpr++W  eLH++Fv av+qL G e+A+Pk+il+lm+v+gL++e+v+SHLQkYR 
  RcHm_v2.0_Chr2g0086131 200 KPRVVWYGELHRKFVAAVNQL-GVERAVPKKILDLMDVEGLSRENVASHLQKYRQ 253
                             79*******************.********************************6 PP
2Myb_DNA-binding30.96.4e-10203252248
                             SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                               W  e++ ++v av+qlG +   +k+I   m  +g++++++ s++qky+
  RcHm_v2.0_Chr2g0086131 203 VVWYGELHRKFVAAVNQLGVEraVPKKILDLMDvEGLSRENVASHLQKYR 252
                             56888********************************************7 PP
3Response_reg745.8e-25161241109
                             EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS
            Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85 
                             vl vdD+p+ ++ l+ +l+k +y +v+++ ++ +ale+l+e++  +Dl++ D++mp+mdG++ll+     e++lp+i+++++++ ++
  RcHm_v2.0_Chr2g0086131  16 VLAVDDDPTCLKFLEGLLRKCKY-HVTTTNQAIKALEMLRENRdkYDLVISDVNMPDMDGFQLLELVGL-EMDLPVIMLSGYSDFKL 100
                             799********************.***************999889*******************87754.558************** PP

                             HHHHHHTTESEEEESS--HHHHHH CS
            Response_reg  86 alealkaGakdflsKpfdpeelvk 109
                             + + ++ Ga  +l Kp+ +eel +
  RcHm_v2.0_Chr2g0086131 101 VMKGISHGACNYLLKPVRIEELKN 124
                             *********************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    
MTVEDQRDRF PEGMRVLAVD DDPTCLKFLE GLLRKCKYHV TTTNQAIKAL EMLRENRDKY  60
DLVISDVNMP DMDGFQLLEL VGLEMDLPVI MLSGYSDFKL VMKGISHGAC NYLLKPVRIE  120
ELKNIWQHVV RKKFDSKDQK KSSNQDKCNG IGEGVQGASP TGSSDQNGKL SKKRKDQNGD  180
EEEESEDDEH ETEDSSSQKK PRVVWYGELH RKFVAAVNQL GVERAVPKKI LDLMDVEGLS  240
RENVASHLQK YRQYLKRISS GMVGSLGGKE SSYVRMGVLD GSRDLQSLRS GRISSTTLST  300
YTSGGMLSRL NSPAGLSTGG ITSSGLGQPG HSQNLSNYIN PFAKLQPTVL PNQSSNLFQA  360
TPALLQLNQL QQSKCITHNG KSYPDNDSTN YTISSTFRNS GVSSSPLPSD SNFSSNHLML  420
HGIPQQTHST EVFGNPTSVK VSFDIGISGS PNFLDYNRCS ENFQGGARLS SFPSNALPMS  480
EPFNHGQMHA NNLGVFSGRP QIGNTLNDFS SVSALSAPVD ELRGNAQNQE GLIGDVVPTL  540
SYMPKQRWEE HKEGYNHELN QTFSAINSPG STLGVNGRVS QSLDQNVAVC SYERNSSLFD  600
RLNGATAMFE QPSAAGKSSM ETKMKANEDY FLEQIKSPSG FVQNSYESLN DIMSTIMKRE  660
QNENLLLDAE FGFDAYSLGS CM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-105ARR-B family protein