PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0085911

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 420aa MW: 43096.7 Da PI: 6.5086

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0085911	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.7e-12	218	263	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq RcHm_v2.0_Chr2g0085911 218 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 263 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence
MNSLLNPQTP FDSSAHDDFL EQMLSTLGPS SCSSWADETP PAPPSAGNSD NNVVFSYDDS 60 SNLATKFRSH QISAGAAASK SSPTASAAAA AAMMLQHQLM MSRGGSSSSG NGAPMGLSLG 120 SNGDFNDIGD GSSFKSPNPG VVDGGSSVQA LFNGFTGSLS PNQPQHFHHH QGGALQAQNY 180 GAQAAAMTQP PANGSAGASA AQPRPRVRAR RGQATDPHSI AERLRRERIA ERMKALQELV 240 PNANKTDKAS MLDEIIDYVK FLQLQVKVLS MSRLGGAGAV APLVTDMSSE GGGDCIQTSA 300 NGGTRAGRSG NQTASSNDSM TVTEHQVAKL MEEDMGSAMQ YLQGKGLCLM PISLATAIST 360 ATCHPRNPLM NGNNNPVITS NGGEGPSSPS MSVLTVQSAT MASNGGVDGS GKDAASVSKP

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence

MNSLLNPQTP FDSSAHDDFL EQMLSTLGPS SCSSWADETP PAPPSAGNSD NNVVFSYDDS  60
SNLATKFRSH QISAGAAASK SSPTASAAAA AAMMLQHQLM MSRGGSSSSG NGAPMGLSLG  120
SNGDFNDIGD GSSFKSPNPG VVDGGSSVQA LFNGFTGSLS PNQPQHFHHH QGGALQAQNY  180
GAQAAAMTQP PANGSAGASA AQPRPRVRAR RGQATDPHSI AERLRRERIA ERMKALQELV  240
PNANKTDKAS MLDEIIDYVK FLQLQVKVLS MSRLGGAGAV APLVTDMSSE GGGDCIQTSA  300
NGGTRAGRSG NQTASSNDSM TVTEHQVAKL MEEDMGSAMQ YLQGKGLCLM PISLATAIST  360
ATCHPRNPLM NGNNNPVITS NGGEGPSSPS MSVLTVQSAT MASNGGVDGS GKDAASVSKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	223	228	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	1e-68	bHLH family protein