PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0384601

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

GRF

Protein Properties

Length: 335aa MW: 36986.9 Da PI: 7.9439

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0384601	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.5	6.5e-25	91	135	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ RcHm_v2.0_Chr1g0384601 91 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 135 79****************************************986 PP
2	QLQ	64.6	2.4e-22	29	65	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+FT +Q+q+L++Q+l++Ky++a++PvPp+L+++iqk RcHm_v2.0_Chr1g0384601 29 SPFTVSQWQELEHQALIFKYMMAGMPVPPDLVLPIQK 65 89*********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence
MNSCSTGGGG GVGGNSTGNL MGMGMGMRSP FTVSQWQELE HQALIFKYMM AGMPVPPDLV 60 LPIQKSFESI SQRFFHHPTM GYCSFYGKKV DPEPGRCRRT DGKKWRCSKD AYPDSKYCER 120 HMHRGRNRSR KPVESQTMTQ SSSTVTSLTV TGTSSGTGSF QTLPLNSFGN TQGASSGTNQ 180 SHYQIDSIPF GIPNKDYRYL QGLKPEIGDH SFFSDTSGSN RGLHMDSPID NTWPLMPSRI 240 ASFPASKSGD GSVLQNDYRQ HSIFNNDFPS GEPLKQEGQS LRPFFDEWPK GRDSWSGLED 300 ERSNQTSFST TQLSISIPMT SSDFSATSSQ SPHDN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-45	GRF family protein