PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0384461

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 786aa MW: 90296.3 Da PI: 6.7358

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0384461	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.5	7e-26	61	147	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 ++Y++YAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++ +g+w+v+++++eHnH RcHm_v2.0_Chr1g0384461 61 DYYKAYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRPNGNWYVYSFVKEHNH 143 59*************************************999877....9********************************* PP FAR1 88 elap 91 el p RcHm_v2.0_Chr1g0384461 144 ELLP 147 *975 PP

Sequence ? help Back to Top
Protein Sequence Length: 786 aa Download sequence
MGHMKTFRPI TSSFEVGEVD GKCRVDLNFP TPTTTTVMEA ISIVEEPHDA MEFESHEAAY 60 DYYKAYAKSV GFGTAKLSSR RSRASKEFID AKFSCIRYGN KQQSDDAINP RPSPKIGCKA 120 SMHVKRRPNG NWYVYSFVKE HNHELLPAQA HFFRSHRNAD PLKNNDVRMR RRKNVNSVSS 180 LFSAYQNVDC LESYLRNQHD KGRSLSLESG DAQVLLECFM RMQEENPKFY YAVDLNEEHR 240 LRNVFWVDSK GMEDYTNFSD VVFFDTTYFT NKYKMPLVLF IGVNHHIQPT LMGCALIADE 300 TVYTFVWLMQ TWLIAMGEQA PRVILSDQND AIKAAIAAVF PGTRHCFSLW HIMEKIHGQL 360 EFWSMWNDTF MAEFNECVFK SWSEEQFDKR WCKLLDKFNL REVEWIQSLY EDRTHWVPTF 420 MRDISFAGLS PTSRSTSLNS SFDKYFQAET SVPEFMESYR VILEDRYEEE AKANFDAWHE 480 TPELKSPSPF EKQLALVYTR EVFKNFQLEV LGAAACHLKK ESEDMTTTTY SVKDIEDEQN 540 YRVEWNESKS DICCSCHSFE YKGYLCRHAI VVLQMSGVFT IPAKYVLQRW TNTAMSRHAI 600 GEKLDEVQSK VRRYNDLCRR AIILGEEGSL SQESYDVALC AIKEALKQCT SLNTSVESNA 660 KPNDSAVDGI CGIEVSQCGM TSDDKIFGPK VSTASKTPRR VGTGKVVARH GKGKVPQPEG 720 MRVGTQDQFS QMQVCSETRP PMLMQLHNVV PPQLHNMVPS MFQNVAPAQF HNVACSTPVQ 780 ENRLPQ

Sequence ? help Back to Top

Protein Sequence Length: 786 aa Download sequence

MGHMKTFRPI TSSFEVGEVD GKCRVDLNFP TPTTTTVMEA ISIVEEPHDA MEFESHEAAY  60
DYYKAYAKSV GFGTAKLSSR RSRASKEFID AKFSCIRYGN KQQSDDAINP RPSPKIGCKA  120
SMHVKRRPNG NWYVYSFVKE HNHELLPAQA HFFRSHRNAD PLKNNDVRMR RRKNVNSVSS  180
LFSAYQNVDC LESYLRNQHD KGRSLSLESG DAQVLLECFM RMQEENPKFY YAVDLNEEHR  240
LRNVFWVDSK GMEDYTNFSD VVFFDTTYFT NKYKMPLVLF IGVNHHIQPT LMGCALIADE  300
TVYTFVWLMQ TWLIAMGEQA PRVILSDQND AIKAAIAAVF PGTRHCFSLW HIMEKIHGQL  360
EFWSMWNDTF MAEFNECVFK SWSEEQFDKR WCKLLDKFNL REVEWIQSLY EDRTHWVPTF  420
MRDISFAGLS PTSRSTSLNS SFDKYFQAET SVPEFMESYR VILEDRYEEE AKANFDAWHE  480
TPELKSPSPF EKQLALVYTR EVFKNFQLEV LGAAACHLKK ESEDMTTTTY SVKDIEDEQN  540
YRVEWNESKS DICCSCHSFE YKGYLCRHAI VVLQMSGVFT IPAKYVLQRW TNTAMSRHAI  600
GEKLDEVQSK VRRYNDLCRR AIILGEEGSL SQESYDVALC AIKEALKQCT SLNTSVESNA  660
KPNDSAVDGI CGIEVSQCGM TSDDKIFGPK VSTASKTPRR VGTGKVVARH GKGKVPQPEG  720
MRVGTQDQFS QMQVCSETRP PMLMQLHNVV PPQLHNMVPS MFQNVAPAQF HNVACSTPVQ  780
ENRLPQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.2	0.0	FAR1 family protein