PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0384441

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 399aa MW: 44756.6 Da PI: 6.6107

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0384441	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.5	2.2e-16	14	69	1	48
TSSS-HHHHHHHHHHHHHTTTT........-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg........tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lv++ ++ Gg+ +W+ +++ g++R++k+c++rw +yl RcHm_v2.0_Chr1g0384441 14 KGPWTAEEDEKLVEYMERCGGDgnhqrrgiSWRQVPKLAGLKRCGKSCRLRWTNYL 69 79****************************************************97 PP
2	Myb_DNA-binding	49.8	7.9e-16	75	118	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ +E++ +++++k+lG++ W+ Ia+ ++ gRt++++k++w++ RcHm_v2.0_Chr1g0384441 75 RGNFSHQEEQTIINLHKLLGNK-WSEIASNLP-GRTDNEIKNFWNT 118 89******************.*****.*********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence
MGRSACCDEN GLKKGPWTAE EDEKLVEYME RCGGDGNHQR RGISWRQVPK LAGLKRCGKS 60 CRLRWTNYLR PDIKRGNFSH QEEQTIINLH KLLGNKWSEI ASNLPGRTDN EIKNFWNTQL 120 KKKLLQMGID PVTHTPISAT HDHLSAIAAS TSFSPCDWAL LQYLNSKIQV LQNNILQGQG 180 LLISNNAGPN AYDQYRSCVL GMDMEAAAVN YYNNYVLGSS PSRSCSVPDQ QLLYHHGHGL 240 GYDYDDLTSA TMMNRHSSCL QGTSFGTSEY DHHDSKFAIP NMKVPFSTDD HHHKLQYGES 300 GHQDHQLPVL VSAATSAYVI ITHDTTAAND QFATPNIPHQ FSNSTHSSTT TTTTSTTYST 360 ATFEIDHEVA CAGRDLIVMD DYHQEATNND QSYWKHIME

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence

MGRSACCDEN GLKKGPWTAE EDEKLVEYME RCGGDGNHQR RGISWRQVPK LAGLKRCGKS  60
CRLRWTNYLR PDIKRGNFSH QEEQTIINLH KLLGNKWSEI ASNLPGRTDN EIKNFWNTQL  120
KKKLLQMGID PVTHTPISAT HDHLSAIAAS TSFSPCDWAL LQYLNSKIQV LQNNILQGQG  180
LLISNNAGPN AYDQYRSCVL GMDMEAAAVN YYNNYVLGSS PSRSCSVPDQ QLLYHHGHGL  240
GYDYDDLTSA TMMNRHSSCL QGTSFGTSEY DHHDSKFAIP NMKVPFSTDD HHHKLQYGES  300
GHQDHQLPVL VSAATSAYVI ITHDTTAAND QFATPNIPHQ FSNSTHSSTT TTTTSTTYST  360
ATFEIDHEVA CAGRDLIVMD DYHQEATNND QSYWKHIME

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	2e-73	MYB family protein