PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0380141
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 103aa    MW: 12462.3 Da    PI: 10.0208
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0380141genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.7e-093372445
                            S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
         Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                            ++++E++l+++  ++ G + W++Ia +++ gRt+ ++  +w 
  RcHm_v2.0_Chr1g0380141 33 MSEQEEDLIYRMYRLVGER-WDLIAGRVP-GRTAVELERFWI 72
                            589****************.*********.********9995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    
MQKMDRCGRK RPKITTSDQS EEVISSEWEF IHMSEQEEDL IYRMYRLVGE RWDLIAGRVP  60
GRTAVELERF WIMRHCEVFA EKRRKHKKEN SKIVPRRTFS GFG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53200.12e-34MYB_related family protein