PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0380101

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 365aa MW: 39760.9 Da PI: 5.8432

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0380101	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.4	2.6e-13	102	153	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h +Er+RR+++N+ + Lr+l+P + k+ + a+i +v+YI++Lq RcHm_v2.0_Chr1g0380101 102 QRMSHITVERNRRKQMNEHLTVLRSLMPCF---YVKRGDQASIIGGVVDYINELQ 153 79*************************9...9******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MDDHLLSEFF EEHDHCYGGG DASSLAPGDD LFSILDSLDA GSLMDSFPPP TPCDELVFSS 60 SKEGGIEVSP ELETSPKSCK RVKLSKEASP GGTGSNSDDG QQRMSHITVE RNRRKQMNEH 120 LTVLRSLMPC FYVKRGDQAS IIGGVVDYIN ELQQVLQSLE AKKQRKAYSE VLSPRLPVSS 180 SPRLPSSPLV LSPRKPPISP LASPRISCSS LPISPRTPQP TSPYKPPRTT SLQQLQQPVY 240 LSSPTITAAS SSLEPSPSNS STTNFSSVNH VIDNLNELFA NSKSAIAHVE VKFSGANVLL 300 NTVSPRIPGQ ALKIISALED LSLEILHVEI KTEDEKMLNS FTIKIGIECQ LSAEELAHQI 360 QQTFR

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MDDHLLSEFF EEHDHCYGGG DASSLAPGDD LFSILDSLDA GSLMDSFPPP TPCDELVFSS  60
SKEGGIEVSP ELETSPKSCK RVKLSKEASP GGTGSNSDDG QQRMSHITVE RNRRKQMNEH  120
LTVLRSLMPC FYVKRGDQAS IIGGVVDYIN ELQQVLQSLE AKKQRKAYSE VLSPRLPVSS  180
SPRLPSSPLV LSPRKPPISP LASPRISCSS LPISPRTPQP TSPYKPPRTT SLQQLQQPVY  240
LSSPTITAAS SSLEPSPSNS STTNFSSVNH VIDNLNELFA NSKSAIAHVE VKFSGANVLL  300
NTVSPRIPGQ ALKIISALED LSLEILHVEI KTEDEKMLNS FTIKIGIECQ LSAEELAHQI  360
QQTFR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	114	RMSHITVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53210.1	4e-98	bHLH family protein