PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0379461 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | WOX | ||||||||
Protein Properties | Length: 223aa MW: 24361.8 Da PI: 4.4327 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 49 | 1e-15 | 40 | 98 | 4 | 56 |
-SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 R+t+t+ ql++L+ l++ +yps e+++e+ l ++++++V++WFqN +a+e+ RcHm_v2.0_Chr1g0379461 40 RWTPTPAQLRILQGLYYDkgYKYPSPEQIQEICLYLkpygEIEDKNVFFWFQNLKARER 98 9***************96579************************************98 PP | |||||||
2 | Wus_type_Homeobox | 87.1 | 1.9e-28 | 38 | 100 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 + RWtPtp Q++iL+ ly+ +G + P+ e+iq+i L+ yG+iedkNVf+WFQN kaRer k RcHm_v2.0_Chr1g0379461 38 TIRWTPTPAQLRILQGLYYdKGYKYPSPEQIQEICLYLKPYGEIEDKNVFFWFQNLKARERLK 100 67***************9889****************************************87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence |
MELQTQQQLE LQAQQPTEEG GSNQAAGSSA NTPIRPTTIR WTPTPAQLRI LQGLYYDKGY 60 KYPSPEQIQE ICLYLKPYGE IEDKNVFFWF QNLKARERLK LKEFRNVRVG GSLDLNFGST 120 SSTDDGRSID LNFGSTGSTG DDGSIDLTLG SQSFMERRGG DHQEVETLPL FPEHGENILG 180 NPKTTSEGGS SFGYYFGGSG GYNSGSPVSL ELSLNPSGAT DLA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17950.1 | 9e-15 | WOX family protein |