PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RcHm_v2.0_Chr1g0378441 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 323aa MW: 35362.8 Da PI: 8.4679 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.4 | 2.8e-12 | 61 | 105 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I + +g +t q++s+ qky RcHm_v2.0_Chr1g0378441 61 RESWTEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 105 789*****************77.*********.*************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 323 aa Download sequence |
MVSKNPTPPD GLYLDPNEMA LPGLGPFASV ATAATTTAST SSSAEDLSKK IRKPYTITKS 60 RESWTEPEHD KFLEALQLFD RDWKKIEAFI GSKTVIQIRS HAQKYFLKVQ KNGTSEHLPP 120 PRPKRKASHP YPQKASKNVL ALPQVSGSCQ SSSALLESAF IQRPDSSSVL ISPIPGGVVP 180 SWPNSSVQTA NLSHETKGPA KPSCNSAEST PNAQPPSETT DQGNRSLNHN HPLRVLPDFC 240 QVYGFIGSVF DPNTSGHLQT LKKMDPIDVE TVLLLMRNLS MNLTSPDFED HRKLLSSYKI 300 DADTTDHLDA SKSLHSDQQK NVA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G52660.1 | 1e-124 | MYB_related family protein |