PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0377201
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 290aa    MW: 32844.4 Da    PI: 7.1578
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0377201genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69e-161764148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g W++eEd++l +++ ++G g+W++++   g+ R +k+c++rw +yl
  RcHm_v2.0_Chr1g0377201 17 KGLWSPEEDQRLRNYILKHGHGCWSSVPINAGLQRNGKSCRLRWINYL 64
                            678*******************************************97 PP
2Myb_DNA-binding55.31.5e-1770115148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg +T++E+e ++ ++++lG++ W+ Ia++++ gRt++++k++w++yl
  RcHm_v2.0_Chr1g0377201  70 RGTFTKQEEETILTLHHMLGNK-WSQIAQHLP-GRTDNEIKNFWHSYL 115
                             899*******************.*********.************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    
MGCKSSDSPK PKPKHRKGLW SPEEDQRLRN YILKHGHGCW SSVPINAGLQ RNGKSCRLRW  60
INYLRPGLKR GTFTKQEEET ILTLHHMLGN KWSQIAQHLP GRTDNEIKNF WHSYLKKKVA  120
KDNEDQDHME LAQSKSQYTS TSSSDHNLDQ PSPCSEKLTS TQIPSYNESP ILVPQIDHQS  180
QRPSPLPKIL FAEWLSLDHV QGGSIGNNTG IDQHDYNPRA DHGLGHTYSF NNEATFGSSG  240
FHHGPATHEI MNSQFRYDPQ DQIPGTGFAD FISGGDLCSD FTLHDDVMYI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.15e-60MYB family protein