PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0376881
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 807aa    MW: 88770.7 Da    PI: 5.8274
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0376881genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.82.9e-21112167156
                             TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             ++k +++t++q++eLe++F+++++p++++r +L+++lgL+++qVk+WFqNrR+++k
  RcHm_v2.0_Chr1g0376881 112 KKKYHRHTPSQIQELESFFKECPHPDEKQRLDLSRRLGLETKQVKFWFQNRRTQMK 167
                             79999************************************************999 PP
2START175.33.6e-553235411206
                             HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS
                   START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla.. 77 
                             ela ea++elv++++a+ p+W+kss    e +n + + ++f+   +      ++a+r+s +v+ ++  lve+++d + +W+ +++  
  RcHm_v2.0_Chr1g0376881 323 ELAGEAMDELVRMVQADTPLWMKSSdggsETLNVELY-RTFSCISTrqsgLVTDASRDSCMVIINSLALVETMMDAN-RWTDMFPtl 407
                             5799*********************998544444444.4443222245669**************************.********* PP

                             ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEE CS
                   START  78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgilie 155
                               +a+t+  issg      g++q m aelq+lsplvp R   f+R+++q+ +g+w++vdvS+d +q+ +    +v +++lpSg++++
  RcHm_v2.0_Chr1g0376881 408 vaRASTIGMISSGpngtrnGTIQMMHAELQMLSPLVPvRPLKFLRFSKQHAEGVWAVVDVSIDIQQDAS----SVNCRRLPSGFIVQ 490
                             *******************************************************************87....69************ PP

                             EECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                   START 156 pksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                             +++ng+skvtw+eh +++++ +h+ll++l++sg+ +ga++w+atlqr ce+
  RcHm_v2.0_Chr1g0376881 491 DMPNGYSKVTWIEHLEYNESGVHQLLQPLLRSGIGFGAQRWLATLQRECES 541
                             *************************************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    
MNFGGLISNS GGVGGSRVVA EIDPHSSGGA IAQPHFIPNS MQTSSALSLS IVQKNMDGHN  60
ELDLIAESFD PGIIGRLREE EFDQSRSGSD HFDGASGDDQ DPVDEDDRPR RKKKYHRHTP  120
SQIQELESFF KECPHPDEKQ RLDLSRRLGL ETKQVKFWFQ NRRTQMKTQL ERHENIILRQ  180
ENDKLRAENG VMKEAMSNPI CHNCGGPAIP GQISFDEHQL RIENARLNDE LSRICTLAQK  240
FLGRPISNLA APRSLPSSTA GLDLAMGING MGCLNAGASN QLSMGFELGD GVGSSSPVMP  300
LMKPVMGMPN DLQHMTDRHV YLELAGEAMD ELVRMVQADT PLWMKSSDGG SETLNVELYR  360
TFSCISTRQS GLVTDASRDS CMVIINSLAL VETMMDANRW TDMFPTLVAR ASTIGMISSG  420
PNGTRNGTIQ MMHAELQMLS PLVPVRPLKF LRFSKQHAEG VWAVVDVSID IQQDASSVNC  480
RRLPSGFIVQ DMPNGYSKVT WIEHLEYNES GVHQLLQPLL RSGIGFGAQR WLATLQRECE  540
SLTFLMSSTN PNEVPRGLSM NSKKSMLRLA QRMMQSFCSG VCGSSVRQWD KLCIDNVSDN  600
VRVMVRQSLE VGEPSGFVLS AATSVWMPVS RSRLFDFLRD WQLRGQWDIL VSCRPLQAMV  660
QVDKDHGGGN SVSLFNAKGL DANNNNNMLM FQETRTDASG SIVVYAPITS TSSDIMRDVV  720
YEGGDSTYVE LLPSGFAILP CVTSDHVKGE GNGSDDGGCL LTVGFQIVCD GGQPTSKLTM  780
HSVKTVIDLI SSTIQKIKSA LQINDGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108112RPRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0HD-ZIP family protein