PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0376821

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 857aa MW: 97549.2 Da PI: 5.9164

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0376821	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.9	9.4e-25	76	161	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +Yn+YAk vGF+vrk+ ++sk +g++++r+f+Cskeg+r+++k++ ++ +++r+etrtgC a+++++++ dgk++v+++e++HnH+ RcHm_v2.0_Chr1g0376821 76 CYNKYAKLVGFNVRKDWVNRSKVHGQVVSRKFTCSKEGYRRRDKRD-VTVKKHRKETRTGCLAHMVITRQPDGKYRVSHIEEQHNHD 161 7****************************************999.999**********************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 857 aa Download sequence
MERGEGDFIS IVEESIDFGV ETNNSLDLNV EQDCHNPKIV HGNGTVSNVS STNDHSVDAV 60 VKVGTEFESD EHAYRCYNKY AKLVGFNVRK DWVNRSKVHG QVVSRKFTCS KEGYRRRDKR 120 DVTVKKHRKE TRTGCLAHMV ITRQPDGKYR VSHIEEQHNH DNVNASTAQV LPLHRESSIS 180 QAADAELVEG TKDFRTLSKL ASESMNRRFR VRESLNNVSI GYNNHLQSER TRDMKKGEVG 240 RLLHYFQRQH VENPSFFYAL QVDTDDKVCN IFWADDKMVS DYDYFGDLVC LDTICRADKN 300 CLPFVQFIGV NHHKQVLIFA AALLYDDTME SYKWLFQTFL EAMSGKKPRT ILTDQDATIV 360 EAIDSVLPET DHCICTWQMY ENALKHISPM VNDTGSFAND FKRCIYDHKD EDDFVSAWGD 420 MLDKYGLQQN DWLKWMFRAR EKWAVVNGRN TIFVDKGTHL VESLFNDLRS YLYSDTTVVQ 480 FFKHFERVVD EQRSKEIEAS DEMNSCLPRL MGNVVMLKHA STVYTSRAFE VFQQGYEKCL 540 NVVVNQCSEN GSLFEYRAKT FGKTQEHSVI FCSSDGTVIC SCKKFESVGF LCSHALKVLD 600 HRNIKVLPAN YVLKRWTKDA RLGIARPSDV STVNDNPKLI VASRYKDLSH RILMLSTRAS 660 ESGEAFQYAV RQLDQVMDGV EKILTLKPED AQAVTSSSTG TTTSDNEHAE TFLDENAFEN 720 QGENGVEGAN EQGSAVLDRG ELMNVNGNFS STNRIQISDA SPQSNHSYIS SEPLTGNPIT 780 QGLYTFEENP VVNCTYAQDN AILFRPPNIF PNQHDSPSQL QLLQEPLING TYQEPISELR 840 QAMDLDLHPP HSPSFLL

Sequence ? help Back to Top

Protein Sequence Length: 857 aa Download sequence

MERGEGDFIS IVEESIDFGV ETNNSLDLNV EQDCHNPKIV HGNGTVSNVS STNDHSVDAV  60
VKVGTEFESD EHAYRCYNKY AKLVGFNVRK DWVNRSKVHG QVVSRKFTCS KEGYRRRDKR  120
DVTVKKHRKE TRTGCLAHMV ITRQPDGKYR VSHIEEQHNH DNVNASTAQV LPLHRESSIS  180
QAADAELVEG TKDFRTLSKL ASESMNRRFR VRESLNNVSI GYNNHLQSER TRDMKKGEVG  240
RLLHYFQRQH VENPSFFYAL QVDTDDKVCN IFWADDKMVS DYDYFGDLVC LDTICRADKN  300
CLPFVQFIGV NHHKQVLIFA AALLYDDTME SYKWLFQTFL EAMSGKKPRT ILTDQDATIV  360
EAIDSVLPET DHCICTWQMY ENALKHISPM VNDTGSFAND FKRCIYDHKD EDDFVSAWGD  420
MLDKYGLQQN DWLKWMFRAR EKWAVVNGRN TIFVDKGTHL VESLFNDLRS YLYSDTTVVQ  480
FFKHFERVVD EQRSKEIEAS DEMNSCLPRL MGNVVMLKHA STVYTSRAFE VFQQGYEKCL  540
NVVVNQCSEN GSLFEYRAKT FGKTQEHSVI FCSSDGTVIC SCKKFESVGF LCSHALKVLD  600
HRNIKVLPAN YVLKRWTKDA RLGIARPSDV STVNDNPKLI VASRYKDLSH RILMLSTRAS  660
ESGEAFQYAV RQLDQVMDGV EKILTLKPED AQAVTSSSTG TTTSDNEHAE TFLDENAFEN  720
QGENGVEGAN EQGSAVLDRG ELMNVNGNFS STNRIQISDA SPQSNHSYIS SEPLTGNPIT  780
QGLYTFEENP VVNCTYAQDN AILFRPPNIF PNQHDSPSQL QLLQEPLING TYQEPISELR  840
QAMDLDLHPP HSPSFLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-100	FAR1 family protein