PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0376061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | bHLH | ||||||||
Protein Properties | Length: 236aa MW: 26619.2 Da PI: 6.3093 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.5 | 5e-08 | 73 | 123 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + +Er+RR+ + + + Lr+llP + ++K s e +Av+YIk+L+ RcHm_v2.0_Chr1g0376061 73 IMRRDNERQRRQVMAIRTASLRSLLPLeL---IKGKRSITEHINEAVNYIKQLK 123 566789*********************78...********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence |
MFPFPHDHQS KDMELQISSS TPHQEDFMQQ DLIMMRGSHD VLPSDLQGRS LSNINISEAN 60 INNMAADSDE RKIMRRDNER QRRQVMAIRT ASLRSLLPLE LIKGKRSITE HINEAVNYIK 120 QLKEKIQELN AKREELRRVY KHYSSSAHDF SPEIDENLGT KSTSNIMVGL TCWGGVEIVA 180 STNGTNCSEL EGFSLSGVLK ALLAEGLTVV ECASTTANQR LIHSIQCEVW LLVPLN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51780.1 | 1e-29 | bHLH family protein |