PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0376011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | bHLH | ||||||||
Protein Properties | Length: 189aa MW: 20314.3 Da PI: 9.065 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.4 | 5.3e-13 | 17 | 69 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++++h +Er+RR+++ ++ Lr+ lP+ + ++K s a+ Av++Ik+Lq RcHm_v2.0_Chr1g0376011 17 KKMMHRDIERKRRQEMAALYASLRSTLPPqS---IKGKRSLADHMNDAVNHIKHLQ 69 6899*************************55...*********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence |
MDNDQPCANS IIDDSQKKMM HRDIERKRRQ EMAALYASLR STLPPQSIKG KRSLADHMND 60 AVNHIKHLQT RIKELGAQRN DLKIQTSSPD LSCTSALGLA GNLSGSTGSS SSLLAGNFSR 120 SRVAVNPCLG GVEIVIISCV TGGSAEPQGV VLSRLLQILL EQGLTVISCA TTQVNKRLVY 180 TIQSEVASL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 25 | 30 | ERKRRQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51790.1 | 1e-42 | bHLH family protein |