PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0376001
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 305aa    MW: 34748 Da    PI: 9.9765
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0376001genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.8e-1381129555
                             HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             h e+Er+RR+++ + +++Lr+llP  +   ++K s ++   +Av+YIk+Lq
  RcHm_v2.0_Chr1g0376001  81 HRENERQRRQEMATLYSRLRSLLPLEF--IKGKRSTSDHMNEAVNYIKHLQ 129
                             99***********************65..*********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
MFPLHQGNKL VFQISSSNPH HQNSSEDRIL GYASPDGCSS TVLSNNNNMG KSRRRKLVVA  60
ALDQTIIENS KDNKKKKMMI HRENERQRRQ EMATLYSRLR SLLPLEFIKG KRSTSDHMNE  120
AVNYIKHLQN RIKTLDAKRD EFKKFPKIST DVDRRCTTGS SLNSDKVNLP SCFTVQPSSG  180
GVQILVSGGF REDGLPLISI SSVLEILLGR GLTVVSCVSS QVNERLLHTI QIEVYQFWFR  240
VLNCYIFWLQ FCVSFKLLFA VQYVLNYIGF LLHIYQVDDV ESLDLSALEQ KLAKALPTSR  300
STISK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.12e-37bHLH family protein