PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0373541
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 359aa    MW: 38737.7 Da    PI: 10.4121
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0373541genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-14105149347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             +WT+eE+  ++ + k+lG+g+W+ Iar + ++Rt+ q+ s+ qky
  RcHm_v2.0_Chr1g0373541 105 PWTEEEHRVFLAGLKKLGKGDWRGIARNFVTTRTPTQVASHAQKY 149
                             8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    
MVKESARKCS HCGHNGHNSR TCNHIGHLTP NNNKGVCLKL FGVNIMERQD DSMKKSFSMG  60
NLQSAGNGDQ NNNINVGADD AGYLSDGLIH NKKRKAAHER KKGRPWTEEE HRVFLAGLKK  120
LGKGDWRGIA RNFVTTRTPT QVASHAQKYF LRQATNDKRK RRTSLFDLHF KELSEQCAHQ  180
DSPLSPTAKT AEASSSSSSS PGSSSKVLPQ ITTTTNSQQA SMPGQVLNRF PHLCLDSPPP  240
VAQMPAASCS VPNYAPVIPY MVGMPGTVPY TAAMHYGSPT FHYILKTQGG SFATCPPVIS  300
HPSGIPSSPK SLPSSPSMGV HRRNSSISKK DALELKIGQP QPSQGANLSS SSSGAIRVT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.18e-65MYB_related family protein