PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0370581

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 310aa MW: 34263.5 Da PI: 6.4077

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0370581	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.8	2.5e-18	66	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l+++v+++G+++W++I++ ++ gR++k+c++rw + RcHm_v2.0_Chr1g0370581 66 KGSWSPQEDSTLIKLVAEHGPRNWSLISSGIP-GRSGKSCRLRWCNQ 111 799***************************.*********985 PP
2	Myb_DNA-binding	53.5	5.4e-17	119	162	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++++ Ed +v+a++++G++ W+tIar ++ gRt++ +k++w++ RcHm_v2.0_Chr1g0370581 119 KPFSPAEDAAIVRAHALHGNK-WATIARLLP-GRTDNAIKNHWNST 162 689****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence
MPTTPPFIHQ KRLKNSSLSL FNSIPPFLLL LLLLLRNSQR APSKSSSSSS SKLTDTMSGG 60 GDNRVKGSWS PQEDSTLIKL VAEHGPRNWS LISSGIPGRS GKSCRLRWCN QLSPDVQHKP 120 FSPAEDAAIV RAHALHGNKW ATIARLLPGR TDNAIKNHWN STLRRRRLAE SSSASSELKR 180 LIGATSDDPE TKRQCLRGAS AEEDSFKAVA AGVEGVLTSL TLSPPGQKVE NEVVLKSEEV 240 GEEEEEDNDD HQEEAVDDEE KCTVEMEETC LMTMMQRMIA QEVRNYIESL RAENGLVFGL 300 QSTVQNDRKC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	4e-52	MYB family protein