PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0370241

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NF-X1

Protein Properties

Length: 867aa MW: 96846.3 Da PI: 8.398

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0370241	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	23.8	9.7e-08	233	251	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG H+C+++CHeGpCppC+ RcHm_v2.0_Chr1g0370241 233 CGVHRCSEICHEGPCPPCR 251 ******************6 PP
2	zf-NF-X1	17.1	1.2e-05	394	413	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H+C++ C+ G+CppC++ RcHm_v2.0_Chr1g0370241 394 CGRHPCKRRCCDGDCPPCSE 413 ******************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 867 aa Download sequence
MSSDSDSDSD HSESGSGSGS TPARRHSDLS DSIFRSYLEF TGKTSATNAD LSKIQSFLTS 60 SSSGALSCLI CLERIRPGDP TWSCTSVCFS VFHLFCIQSW ARQASDLSAL RASTRLPISQ 120 SKAAEVSLWN CPKCRVEYTQ SQIPKIYRCF CGKLENPPSD DPWILPHSCG EVCNRPLKHN 180 CGHHCLLLCH PGPCPSCPKL VKARCFCGSV QDMRRCGFKN FSCNNACEKK LACGVHRCSE 240 ICHEGPCPPC RVRGRYRCQC GKREEEKECC ERLDFRCEEN CERMLGCGQH MCSKGCHSGE 300 CGPCPFQGKR TCPCGKRVHE GLSCKDAVPL CGATCDKMLS CGYHRCPERC HRGQCLETCR 360 TVVTKRCRCG GLKKEVPCHQ DLACERKCQR LRDCGRHPCK RRCCDGDCPP CSEICGRKLR 420 CKNHKCPSPC HRGACAPCPV MVTIACLCGA THFEVPCGTE MDQKPPRCRK PCPITPLCRH 480 GPNSKPHKCH YGACHPCKLL CEEEYPCGHN CKLRCHGPKP PPNPEFTLKP KKKKSFHQPE 540 CTPGSPCPPC PEFVWRSCVG QHFAADRMMV CSDKSLFSCD NLCGNPLPCG NHFCTKTCHP 600 LKNQSLPSGQ QARSEPCEVC YLPCEKERAP ACIHPCPLSC HPGDCPPCKV LVKRSCHCGS 660 MVHVFECIYY NSLSEKEQTA VRSCKGLCHR KLPYCTHLCP ETCHPGQCSS PEKCSKKVTV 720 RCGCQTLKRE WLCHDVQAAY RNAGTDPKDI PKNQFGLGLL PCDSNCKSKQ KVVDSELHSR 780 RPKVVEVKEP DTDKPAPKRK KRRERGQEVA QISTLQKILA HMKRFLLVVT ILVALAAVSY 840 YGYRGLLWLS DWMNEVEEKR QRRHPRI

Sequence ? help Back to Top

Protein Sequence Length: 867 aa Download sequence

MSSDSDSDSD HSESGSGSGS TPARRHSDLS DSIFRSYLEF TGKTSATNAD LSKIQSFLTS  60
SSSGALSCLI CLERIRPGDP TWSCTSVCFS VFHLFCIQSW ARQASDLSAL RASTRLPISQ  120
SKAAEVSLWN CPKCRVEYTQ SQIPKIYRCF CGKLENPPSD DPWILPHSCG EVCNRPLKHN  180
CGHHCLLLCH PGPCPSCPKL VKARCFCGSV QDMRRCGFKN FSCNNACEKK LACGVHRCSE  240
ICHEGPCPPC RVRGRYRCQC GKREEEKECC ERLDFRCEEN CERMLGCGQH MCSKGCHSGE  300
CGPCPFQGKR TCPCGKRVHE GLSCKDAVPL CGATCDKMLS CGYHRCPERC HRGQCLETCR  360
TVVTKRCRCG GLKKEVPCHQ DLACERKCQR LRDCGRHPCK RRCCDGDCPP CSEICGRKLR  420
CKNHKCPSPC HRGACAPCPV MVTIACLCGA THFEVPCGTE MDQKPPRCRK PCPITPLCRH  480
GPNSKPHKCH YGACHPCKLL CEEEYPCGHN CKLRCHGPKP PPNPEFTLKP KKKKSFHQPE  540
CTPGSPCPPC PEFVWRSCVG QHFAADRMMV CSDKSLFSCD NLCGNPLPCG NHFCTKTCHP  600
LKNQSLPSGQ QARSEPCEVC YLPCEKERAP ACIHPCPLSC HPGDCPPCKV LVKRSCHCGS  660
MVHVFECIYY NSLSEKEQTA VRSCKGLCHR KLPYCTHLCP ETCHPGQCSS PEKCSKKVTV  720
RCGCQTLKRE WLCHDVQAAY RNAGTDPKDI PKNQFGLGLL PCDSNCKSKQ KVVDSELHSR  780
RPKVVEVKEP DTDKPAPKRK KRRERGQEVA QISTLQKILA HMKRFLLVVT ILVALAAVSY  840
YGYRGLLWLS DWMNEVEEKR QRRHPRI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	797	803	PKRKKRR
2	799	805	RKKRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein