PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0369391

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 1096aa MW: 125708 Da PI: 8.1425

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0369391	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.6	4.9e-24	263	349	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 ++Yn+YA+ vGFsvr+ +s+k k+++ + kr+f+Cs+eg+ +++++ +++r+e r gCka+l++k+++dgk++vtk+e eH+H RcHm_v2.0_Chr1g0369391 263 DYYNSYARVVGFSVRRLRSNKYKHTNVTWKREFCCSCEGFYTKKNTP----EKKREERRFGCKAMLQIKLNEDGKFVVTKFEAEHTH 345 69*************************************998777....889999**************************** PP FAR1 88 elap 91 +l+p RcHm_v2.0_Chr1g0369391 346 DLVP 349 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1096 aa Download sequence
MEDRNVRMNT GMSHVMPYIK DSKDRDTVSL VCRRWYELDA LTREHVTIAL CYTTTPERLR 60 RRFRQLKSLK LKGKPRAAMF NRIPEDWGGY VTPWVEEIAE SFKSLKALHF RRMIVSDSDL 120 ELLARSRGRE LQSLKLDKCS GFSTDGLVHI ARFCRLTECI VIGTQAYTTK FMENKDDESC 180 YQHCSNTENE QRGCEDDAID GETNEEPEYD TQEASSDTQV PSDDEHGDSS LEGLCILDGK 240 KQAGGENIPV LGMSFESDQD AYDYYNSYAR VVGFSVRRLR SNKYKHTNVT WKREFCCSCE 300 GFYTKKNTPE KKREERRFGC KAMLQIKLNE DGKFVVTKFE AEHTHDLVPE SSSHVLRSQR 360 TIEPSQGGLM NQMHFAGFKP SQIFSYLTVE AGGPENLNFL QTDCNNFIQR RRAKFLKKGD 420 AQCLLDYFKK KQMEDKSFFY AIRTNIDNEI CGCFFCDGKS RSDYTIFGDV VVFDTTFKTN 480 KYDMVCAPIV GVNHHGQTIL FGCGLLDGET TEACKWFFDV FLQAMGGKKP KTIFTDQAAS 540 IASAIREVLP NSHHRLCLWH IYQNAAKHLS QVFTKFSTFS QAFKSCIYDP ESVEEFESSW 600 KDLLDYYDLK ENEWLKDLYN LREKWAQIYG RCNFCAGMTT TQRSESINKT LKKFFYKNLI 660 LCEWVVHYER ALVDRREKER LAEVATTQRK RKLLSNWKVE VEAAKMYTKA SFNCFQEEFR 720 KCLDLILELE SDDGRIETYV VQRPGNPNLR RSVIYSPSNQ SVNCSCKRFQ FEGILCAHAL 780 KLFRELGLST LPSKYYLKRW RRDARQGVDL ECYGEANFSD RSASSALQYS HLSHIAQRIV 840 AKGAKDKQSS TLVESKLLEL EAELDGNLSI GQEHETNGDI DSNDQVNENN ANLVLRDPKV 900 KRGRRRGKGK RNNDLGSKKQ SKLRSSSVRR EQEDGPVPLK EQNVSVSRKR KTPSKRKDSQ 960 EPNSYEHEKT GPSNSYEHVQ GSIGLVNQNQ SNMPFINPGF PTTFGPQGIP SHYPYGFPPT 1020 TSSVQAMPNQ SHDIPSHYPY GFPPTASIVH AIPSQSLGYQ PIRPMFDYSL MYSQAIIQPR 1080 PQGPAHQLNF PDPSTS

Sequence ? help Back to Top

Protein Sequence Length: 1096 aa Download sequence

MEDRNVRMNT GMSHVMPYIK DSKDRDTVSL VCRRWYELDA LTREHVTIAL CYTTTPERLR  60
RRFRQLKSLK LKGKPRAAMF NRIPEDWGGY VTPWVEEIAE SFKSLKALHF RRMIVSDSDL  120
ELLARSRGRE LQSLKLDKCS GFSTDGLVHI ARFCRLTECI VIGTQAYTTK FMENKDDESC  180
YQHCSNTENE QRGCEDDAID GETNEEPEYD TQEASSDTQV PSDDEHGDSS LEGLCILDGK  240
KQAGGENIPV LGMSFESDQD AYDYYNSYAR VVGFSVRRLR SNKYKHTNVT WKREFCCSCE  300
GFYTKKNTPE KKREERRFGC KAMLQIKLNE DGKFVVTKFE AEHTHDLVPE SSSHVLRSQR  360
TIEPSQGGLM NQMHFAGFKP SQIFSYLTVE AGGPENLNFL QTDCNNFIQR RRAKFLKKGD  420
AQCLLDYFKK KQMEDKSFFY AIRTNIDNEI CGCFFCDGKS RSDYTIFGDV VVFDTTFKTN  480
KYDMVCAPIV GVNHHGQTIL FGCGLLDGET TEACKWFFDV FLQAMGGKKP KTIFTDQAAS  540
IASAIREVLP NSHHRLCLWH IYQNAAKHLS QVFTKFSTFS QAFKSCIYDP ESVEEFESSW  600
KDLLDYYDLK ENEWLKDLYN LREKWAQIYG RCNFCAGMTT TQRSESINKT LKKFFYKNLI  660
LCEWVVHYER ALVDRREKER LAEVATTQRK RKLLSNWKVE VEAAKMYTKA SFNCFQEEFR  720
KCLDLILELE SDDGRIETYV VQRPGNPNLR RSVIYSPSNQ SVNCSCKRFQ FEGILCAHAL  780
KLFRELGLST LPSKYYLKRW RRDARQGVDL ECYGEANFSD RSASSALQYS HLSHIAQRIV  840
AKGAKDKQSS TLVESKLLEL EAELDGNLSI GQEHETNGDI DSNDQVNENN ANLVLRDPKV  900
KRGRRRGKGK RNNDLGSKKQ SKLRSSSVRR EQEDGPVPLK EQNVSVSRKR KTPSKRKDSQ  960
EPNSYEHEKT GPSNSYEHVQ GSIGLVNQNQ SNMPFINPGF PTTFGPQGIP SHYPYGFPPT  1020
TSSVQAMPNQ SHDIPSHYPY GFPPTASIVH AIPSQSLGYQ PIRPMFDYSL MYSQAIIQPR  1080
PQGPAHQLNF PDPSTS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	947	952	SRKRKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-136	FAR1 family protein