PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0369341
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 303aa    MW: 34408.2 Da    PI: 7.1472
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0369341genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.4e-072467344
                            SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
         Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                             WT eE +++ +a + +  +   +W  Ia +++ g+t+ ++   +
  RcHm_v2.0_Chr1g0369341 24 DWTREENKQFERALAIYDEKtpdRWGMIALMIP-GKTAVDVFKQY 67
                            6********************************.****9986655 PP
2Myb_DNA-binding39.31.5e-12125169347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             +WT++E+++++++  ++G+g+W+ I+r +   +t+ q+ s+ qky
  RcHm_v2.0_Chr1g0369341 125 PWTEDEHLRFLKGLLKYGKGDWRNISRNFVFSKTPTQVASHAQKY 169
                             7*****************************778***********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MQTLYPPSYM ADTNWFVQGS QSSDWTREEN KQFERALAIY DEKTPDRWGM IALMIPGKTA  60
VDVFKQYKEL EDDVSDIEAG LVEIPGYQQP SSFTLELVDD RNFDANRKRS AATRGSDQER  120
KKGIPWTEDE HLRFLKGLLK YGKGDWRNIS RNFVFSKTPT QVASHAQKYF MRQHSGGKDK  180
RRPSIHDITT VNLTSTTTTS PSQNNNRPPL DQSPPPEHNN KSTESPRVVP DWNMPNDGLA  240
GAMIFGATHG DLFESSSPFD VGSPDDLKLH WQKLYASATH YAAHARSPSS MYLMQTSRHQ  300
IHG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.19e-81MYB family protein