PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0369061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 410aa MW: 45044.6 Da PI: 6.7061 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.7 | 5.6e-18 | 37 | 82 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++ Ede l ++v+q+G ++W+ Iar ++ gR++k+c++rw + RcHm_v2.0_Chr1g0369061 37 RGSWSPKEDEMLTRLVTQFGARNWSVIARGIP-GRSGKSCRLRWCNQ 82 89******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 53.8 | 4.3e-17 | 89 | 133 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r++++ eEd ++v a++ +G++ W+ Ia+ ++ gRt++ +k++w++ RcHm_v2.0_Chr1g0369061 89 RKPFSDEEDRIIVAAHATHGNR-WAIIAKLLP-GRTDNAIKNHWNST 133 789*******************.*********.***********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence |
MTVPNDAASK LDSHRAEPDA SSSLADDGGE VAAGKVRGSW SPKEDEMLTR LVTQFGARNW 60 SVIARGIPGR SGKSCRLRWC NQLNPGVKRK PFSDEEDRII VAAHATHGNR WAIIAKLLPG 120 RTDNAIKNHW NSTLKRGRKY IPRTRNMKED SSLERSKASS EETVSAGNLS SVRTPEGREV 180 LIVDNSFNQL DGRCQTEDGV AVTELKDNSI LVAELKEEST LCRPVARVSA FSAYNPSNGP 240 SNGSIVPRPV PTHGPLVQTS NLDFDFCNSL EGDCNEPMVP LRCGHGCCDR SGGHFQSSLL 300 GPEFIDYEEP PSFSSPEFIS CATDVNNIAW IKSGLENRET MRVAENVASQ RFSQAAAATP 360 QMGYYEMNMM NGHMRFVEGQ NRLMGMMTEM LSTPMPRQTF AMPTEVKGLS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 1e-86 | MYB family protein |