PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0368731

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TALE

Protein Properties

Length: 406aa MW: 45990.9 Da PI: 9.7817

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0368731	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	34.1	4.7e-11	263	300	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +e++ LA+++gL+ +qV++WF N R + RcHm_v2.0_Chr1g0368731 263 FEHflHPYPSDSEKQMLAQQTGLSRTQVSNWFINSRVR 300 554459******************************88 PP
2	BELL	90.2	2.1e-29	129	199	2	72
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 r elq k ++L +leeV+krYk y++q++ v++sFe++ glg+a+pY+s+A kai +hF cLk+ai +++ RcHm_v2.0_Chr1g0368731 129 RVELQLKNSRLTIMLEEVYKRYKLYCQQMESVVASFETIDGLGNAAPYISFAIKAILKHFGCLKNAILDKL 199 789****************************************************************9885 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MADEGFKAFH VPRQSRRDQL RVVNLLTNPP QPQLSLFTPS TMPTPQPPLS PHFSDHDHRV 60 SFEGGEFRSS VPLGPFTGYA SILKRSRFLK PAQQLLQDFC GSDRSDSNLP LLNCFIGRGR 120 DQISGVSDRV ELQLKNSRLT IMLEEVYKRY KLYCQQMESV VASFETIDGL GNAAPYISFA 180 IKAILKHFGC LKNAILDKLQ SKGKSSVGDF SHVEDEIRGV SRRGFHSQNP SHENLTNNFH 240 LSEIRSQRGL PENAVAVMRT WLFEHFLHPY PSDSEKQMLA QQTGLSRTQV SNWFINSRVR 300 LWKPMVEEIH SLETQQAPIV SVSDTTSRNT RMAPSFRSSS LENRLHLENL PQTKRCRTNK 360 HSDLSKQSET QRNAGDYGSL SSNYFRMNTG SHEGEVSLAL SLQAKK

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MADEGFKAFH VPRQSRRDQL RVVNLLTNPP QPQLSLFTPS TMPTPQPPLS PHFSDHDHRV  60
SFEGGEFRSS VPLGPFTGYA SILKRSRFLK PAQQLLQDFC GSDRSDSNLP LLNCFIGRGR  120
DQISGVSDRV ELQLKNSRLT IMLEEVYKRY KLYCQQMESV VASFETIDGL GNAAPYISFA  180
IKAILKHFGC LKNAILDKLQ SKGKSSVGDF SHVEDEIRGV SRRGFHSQNP SHENLTNNFH  240
LSEIRSQRGL PENAVAVMRT WLFEHFLHPY PSDSEKQMLA QQTGLSRTQV SNWFINSRVR  300
LWKPMVEEIH SLETQQAPIV SVSDTTSRNT RMAPSFRSSS LENRLHLENL PQTKRCRTNK  360
HSDLSKQSET QRNAGDYGSL SSNYFRMNTG SHEGEVSLAL SLQAKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02030.1	9e-73	TALE family protein