PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0368211
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 235aa    MW: 26652.4 Da    PI: 8.0001
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0368211genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.5e-0872122355
                             HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              +   +Er+RR+ +  + + Lr+llP  +    ++K s +e   +Av+YIk+L+
  RcHm_v2.0_Chr1g0368211  72 IMRRDNERQRRQVMAIRTASLRSLLPLeL---IKGKRSISEHINEAVNYIKQLK 122
                             566789*********************78...********************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MFPFPHDHQS KDFELQMYST PHQKDFMQQD LIMMRGSHEV LPSDLQGRGL SNINISKANI  60
NNMATDSDER KIMRRDNERQ RRQVMAIRTA SLRSLLPLEL IKGKRSISEH INEAVNYIKQ  120
LKEKIQELNA KKEELRRVYK QYSSSAHDFS PEINENLGTK STSNIMVGPT CWGGVEIVVS  180
TNSTNCSELE GFSLSGVLKA LLAESLTVVE CASTAANKRS FHSLQCEVWL LVPLN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.12e-30bHLH family protein