PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0365881
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 270aa    MW: 30642.2 Da    PI: 6.8879
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0365881genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.80.000221581971155
                             HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             rR +++ +++  L++l+ +      +K + a++L++A  YI  Lq
  RcHm_v2.0_Chr1g0365881 158 RRSQKLSDKITALQKLVSPY-----GKTDTASVLQEASIYIVLLQ 197
                             7999**************99.....9***************8777 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MTNWDTQMNM NRKIGFCMGS KAIESDNETG DISDVPFDQS SLFTYQTAVT AGYSNGEFRY  60
DHGIFQHPML FDKNINSATQ FQEDLQVIQN ARKRPIIEVN DILPKNDLGG SIGERTTSNE  120
WNQNKRNKGT NSQQQWHNQF QEASMEKQDN RKLQVPVRRS QKLSDKITAL QKLVSPYGKT  180
DTASVLQEAS IYIVLLQQQI QNLHRIFSSS YKNAAGLHTQ ESGSSSQVLD LRSNGLCLVP  240
ISLTQKVTME EGFDEDHLST SRKFVIANHF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.18e-22bHLH family protein