PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0365451

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WOX

Protein Properties

Length: 249aa MW: 27904.1 Da PI: 8.0811

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0365451	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	45.4	1.3e-14	31	91	3	57
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+ +t++ +++L+elF++ r p+ e+++++ +l +++ ++V++WF N+Ra+ekk RcHm_v2.0_Chr1g0365451 31 TRWIPTTDHIRILKELFYNkgVRSPTIEQIQRICLQLkwygKIEFKNVYFWFVNQRAREKK 91 8***************7789************************************8 PP
2	Wus_type_Homeobox	83.3	2.8e-27	29	93	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRW Pt++ i+iL+el++ +G+r+P+ e+iqri +L+ yGkie kNV++WF N++aRe++k+ RcHm_v2.0_Chr1g0365451 29 SHTRWIPTTDHIRILKELFYnKGVRSPTIEQIQRICLQLKWYGKIEFKNVYFWFVNQRAREKKKK 93 679************98769**************************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence
MEPQNRNPTE DGGSNKAAEI SANMLRRESH TRWIPTTDHI RILKELFYNK GVRSPTIEQI 60 QRICLQLKWY GKIEFKNVYF WFVNQRAREK KKKKSTSDVH VPMQRSGLVG DDNVTNWKHE 120 DQYINFGSSA PASASSASVM IAFNGQIGNY GGYGSMNMEN SARDCSISVG GRTSSTFFDM 180 NVEQTFMEQR GEDRQEIETL SLFPVHGEDI FGNMKTTSDG GGGHGGGSYI SLELSLSCEG 240 KAGKSFWSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	1e-26	WOX family protein