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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0364341 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | AP2 | ||||||||
Protein Properties | Length: 457aa MW: 49668.3 Da PI: 8.7016 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.9 | 4.4e-17 | 151 | 200 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aaka+++a+ k++g RcHm_v2.0_Chr1g0364341 151 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAAKAYDRAAIKFRG 200 78*******************......55************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 457 aa Download sequence |
MLDLNVDVIS STVDQSSYDD KARALEAEKL REDSGSSDSS VVNAEEDSYS NNTSPFIFDI 60 LKKDKHGLCN NKEDQIVPSP EFATRSLFPV TGDGGGGGGE LGLLASSNST SRPQWLNLSF 120 AESGGQAELK VVQQKQQQAR KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG 180 FDTAHSAAKA YDRAAIKFRG VDADINFVLS DYEEDLKQMR HLNKEEFVHV LRRQSNGASR 240 GNSKLRGVAA AAAAAAAVPK IGPFEVRMGQ LIPGNKLIKC NGREGVANFD PSIYEGAVVV 300 DASTEGSGHN LDLSLGISQP STGQKRKAFE INTKEKPMVN GSASAAGGQP LNATAMLSKH 360 PALYSEIYPG FLHKTEEMAT DYHKRIQAVS SPRFSNWAWQ MNGNNNNVTP MQVFSIAASS 420 GFSSSIATVP PSATNQLPPI LQDNSTYNLR HPFPTSL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.1 | 1e-64 | AP2 family protein |