PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0364341
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family AP2
Protein Properties Length: 457aa    MW: 49668.3 Da    PI: 8.7016
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0364341genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.4e-17151200155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aaka+++a+ k++g
  RcHm_v2.0_Chr1g0364341 151 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAAKAYDRAAIKFRG 200
                             78*******************......55************************997 PP

Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    
MLDLNVDVIS STVDQSSYDD KARALEAEKL REDSGSSDSS VVNAEEDSYS NNTSPFIFDI  60
LKKDKHGLCN NKEDQIVPSP EFATRSLFPV TGDGGGGGGE LGLLASSNST SRPQWLNLSF  120
AESGGQAELK VVQQKQQQAR KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG  180
FDTAHSAAKA YDRAAIKFRG VDADINFVLS DYEEDLKQMR HLNKEEFVHV LRRQSNGASR  240
GNSKLRGVAA AAAAAAAVPK IGPFEVRMGQ LIPGNKLIKC NGREGVANFD PSIYEGAVVV  300
DASTEGSGHN LDLSLGISQP STGQKRKAFE INTKEKPMVN GSASAAGGQP LNATAMLSKH  360
PALYSEIYPG FLHKTEEMAT DYHKRIQAVS SPRFSNWAWQ MNGNNNNVTP MQVFSIAASS  420
GFSSSIATVP PSATNQLPPI LQDNSTYNLR HPFPTSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.11e-64AP2 family protein