PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0361301

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 775aa MW: 84351.5 Da PI: 6.135

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0361301	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.5	4.7e-16	24	68	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ RcHm_v2.0_Chr1g0361301 24 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 775 aa Download sequence
MDNFSSGEDL IVKARKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFS KLEKEAGSKG VPVGQSIDID IPPPRPKRKP SNPYPRKSSE AAPTWSTSHV 120 GAKDGKLVSS ASSSHCKQAV DLEKGPLDER SSGEEKLSYG KENKDESCSE VFTLLSESHC 180 SSVSSANKSS KPAQAVLRNA CTFREYVPSV KKVIPRDGNE SYVTIELKGN ENLKKTDAKK 240 IVQDNATSEA SKLENTNAFK LVQGEKADDL NCSLPTDGMR STPTCPRNVP IHILDGSVGE 300 CNQTTTPDLS FSFQDSVFHP MGKIRVQPNL FTNPAASTTT TEHESNVSRS CIDQSFPAIP 360 PPFTPFHHNQ EDYHSSLSST FSSLIVSSLL QNPAAHAAAS FAATFWPYTN AENKECSPAC 420 SAGGFPSSQM NSPPNMAAIA AATVAAATAW WAAHGLLPLC APLQTSFSCP VPVPMTGVSS 480 MDNDQAPAAE TKKGQDSLQV PCLQDQLQDP EQSEAVQEQH SPPKSPTTTS SDSENGGAKP 540 DIGSKADDNE DLATTEVQDL NKAKSKKQVD RSSCGSNTTS CSEVETDALE KQEKGEEELK 600 EPDINPASES SYRRTRSISN MSDSWKERHM NDSWKEVSEE GRMAFQALFS REVLPQSFSP 660 PPDLNDKGHQ DTIEGQQNSG EKDGRSLMLD LNSKAWAPFC HPEVEKIASP PGGLNGAGGL 720 LTLGLGYGKL KARRTGFKPY KRCSVEANEN RVANASSHCE EKGPKRLRLE GEAST

Sequence ? help Back to Top

Protein Sequence Length: 775 aa Download sequence

MDNFSSGEDL IVKARKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFS KLEKEAGSKG VPVGQSIDID IPPPRPKRKP SNPYPRKSSE AAPTWSTSHV  120
GAKDGKLVSS ASSSHCKQAV DLEKGPLDER SSGEEKLSYG KENKDESCSE VFTLLSESHC  180
SSVSSANKSS KPAQAVLRNA CTFREYVPSV KKVIPRDGNE SYVTIELKGN ENLKKTDAKK  240
IVQDNATSEA SKLENTNAFK LVQGEKADDL NCSLPTDGMR STPTCPRNVP IHILDGSVGE  300
CNQTTTPDLS FSFQDSVFHP MGKIRVQPNL FTNPAASTTT TEHESNVSRS CIDQSFPAIP  360
PPFTPFHHNQ EDYHSSLSST FSSLIVSSLL QNPAAHAAAS FAATFWPYTN AENKECSPAC  420
SAGGFPSSQM NSPPNMAAIA AATVAAATAW WAAHGLLPLC APLQTSFSCP VPVPMTGVSS  480
MDNDQAPAAE TKKGQDSLQV PCLQDQLQDP EQSEAVQEQH SPPKSPTTTS SDSENGGAKP  540
DIGSKADDNE DLATTEVQDL NKAKSKKQVD RSSCGSNTTS CSEVETDALE KQEKGEEELK  600
EPDINPASES SYRRTRSISN MSDSWKERHM NDSWKEVSEE GRMAFQALFS REVLPQSFSP  660
PPDLNDKGHQ DTIEGQQNSG EKDGRSLMLD LNSKAWAPFC HPEVEKIASP PGGLNGAGGL  720
LTLGLGYGKL KARRTGFKPY KRCSVEANEN RVANASSHCE EKGPKRLRLE GEAST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.3	3e-55	MYB_related family protein