PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0360601 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | WOX | ||||||||
Protein Properties | Length: 224aa MW: 25275 Da PI: 9.1032 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 43.4 | 5.7e-14 | 23 | 84 | 2 | 57 |
T--SS--HHHHHHHHHH.HHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeel.Fek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+ +t++q+++L+el ++k r p+ e+++++ +l +++ ++V++WF N+Ra+ek+ RcHm_v2.0_Chr1g0360601 23 STRWIPTTDQIRILKELdYNKgVRSPTVEQIQRIYLHLrwygSVESKNVYYWFRNQRAREKQ 84 58************99857778**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 91.2 | 1e-29 | 22 | 86 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeel.yksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRW Pt++Qi+iL+el y++G+r+P+ e+iqri +L+ yG +e+kNV+yWF N++aRe+qk+ RcHm_v2.0_Chr1g0360601 22 SSTRWIPTTDQIRILKELdYNKGVRSPTVEQIQRIYLHLRWYGSVESKNVYYWFRNQRAREKQKK 86 689***************999******************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence |
MEPQTRQPTE DGGSNKVAGR KSSTRWIPTT DQIRILKELD YNKGVRSPTV EQIQRIYLHL 60 RWYGSVESKN VYYWFRNQRA REKQKKSSTS HVHVPMQKSG LVSNGNGTNW KPEDQYINFG 120 SSASASVSSA DVMIAFKGQM GNYGGYGSMN TEIETLPLFP MHNEDIFGNM KTSSEGGGGY 180 SYYSCGWGGY NGDSHISLEL SLNSYDSTLF SRERVFSVRE ETKL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17950.1 | 3e-26 | WOX family protein |