PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0357331
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 341aa    MW: 37796.6 Da    PI: 9.0312
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0357331genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.21.8e-1370114147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  RcHm_v2.0_Chr1g0357331  70 RESWTEQEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 114
                             789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MVSVNPNPAP QGFYLFDPTN MGLPGLNSVP PPTTPSTTTT TTSSAPQNAA SLADDLSKKI  60
RKPYTITKSR ESWTEQEHDK FLEALQLFDR DWKKIEAFIG SKTVIQIRSH AQKYFLKVQK  120
KGTSEHVPPP RPKRKATHPY PQKAPKSAPV ASQVVVPFES SSALLEHGYA YQPDSSFVLG  180
TPVTSASLSS WSHSYVPPVN ASQITKDDGK LAGSTDAQNS CYSSSNESKP TTWLMGETVG  240
RACHRQPQRV LPDFAQVYKF IGSVFDPNST SHLERLKQMD PINLETALLL MRNLSINLTS  300
PEFEDHRRIL LSYEMKSEKA KPENDCNFSC HGKSENAILS T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.11e-107MYB_related family protein