PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0355211

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 647aa MW: 72188.6 Da PI: 5.3636

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0355211	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.7	0.00023	463	496	17	55
HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 N+++ Lr+++P+ + + a+iL +++Y+k+L+ RcHm_v2.0_Chr1g0355211 463 NEKLLVLRSMVPSM-----TEIDRASILDDTIKYLKELE 496 99999******8.....79*************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 647 aa Download sequence
MANGTQIHER VPENLRKQFA VAVRSIKWSY AIFWSLSTTQ QGVLEWGEGY YNGDIKTRKT 60 VEGIEPKADK IGLQRNEQLR ELYKALLEGE STDQQAKVPS AALSPEDLTD AEWYYLLCMS 120 FVFNIGEGLP GRALANGKSI WLCNAQYADS KVFSRSLLAK SASIQTVVCF PYLGGVVELG 180 VTELVAEDPS LLQHIKASLL DFSKPDCSEK ASSAPHKADE DSDQILANIV GHEIVDTLGL 240 ENLYSPSQEL KFDQSGINGL HGHDEEFSMG SADECSRGCE HNHQTEDSFM LEAVNGGASQ 300 VQSWHFMDDD FSNGFQDSMN SSDCISEAFV NQGKAHSSTR PENKNHSHLK ELQNFNDTKF 360 SSLDLGPADD HLHYKRTLSA VLGNSMRIIE NPYFCSGGGK SSFVQWKKGV VYKCSPKAQQ 420 KLLKKILFTV PLMMSGGSPS PQKEIATNSK SESDDMHEKM RENEKLLVLR SMVPSMTEID 480 RASILDDTIK YLKELEARAE EIESCMDTVE AIARRKFLER AEKASDNYDK TKTGNPKKPW 540 INKRKACDID ESDPELNRLV SKESLPLDVK VSVKEQEVLI EMRCPYREYI LLDIMDAVNS 600 LYLDAHSVQS STLNDVLTLS LKSKFRGSAI APVGMIKQAL WKIAGKC

Sequence ? help Back to Top

Protein Sequence Length: 647 aa Download sequence

MANGTQIHER VPENLRKQFA VAVRSIKWSY AIFWSLSTTQ QGVLEWGEGY YNGDIKTRKT  60
VEGIEPKADK IGLQRNEQLR ELYKALLEGE STDQQAKVPS AALSPEDLTD AEWYYLLCMS  120
FVFNIGEGLP GRALANGKSI WLCNAQYADS KVFSRSLLAK SASIQTVVCF PYLGGVVELG  180
VTELVAEDPS LLQHIKASLL DFSKPDCSEK ASSAPHKADE DSDQILANIV GHEIVDTLGL  240
ENLYSPSQEL KFDQSGINGL HGHDEEFSMG SADECSRGCE HNHQTEDSFM LEAVNGGASQ  300
VQSWHFMDDD FSNGFQDSMN SSDCISEAFV NQGKAHSSTR PENKNHSHLK ELQNFNDTKF  360
SSLDLGPADD HLHYKRTLSA VLGNSMRIIE NPYFCSGGGK SSFVQWKKGV VYKCSPKAQQ  420
KLLKKILFTV PLMMSGGSPS PQKEIATNSK SESDDMHEKM RENEKLLVLR SMVPSMTEID  480
RASILDDTIK YLKELEARAE EIESCMDTVE AIARRKFLER AEKASDNYDK TKTGNPKKPW  540
INKRKACDID ESDPELNRLV SKESLPLDVK VSVKEQEVLI EMRCPYREYI LLDIMDAVNS  600
LYLDAHSVQS STLNDVLTLS LKSKFRGSAI APVGMIKQAL WKIAGKC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	1e-161	bHLH family protein