PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0352951

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 513aa MW: 58358.9 Da PI: 9.6669

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0352951	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	63	5.8e-20	10	56	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+dav+++ g++Wk+Ia+++ gRt+ qc +rwqk+l RcHm_v2.0_Chr1g0352951 10 KGGWTEEEDRILADAVEKHNGKNWKRIAECVR-GRTDVQCLHRWQKVL 56 688***************************.**********986 PP
2	Myb_DNA-binding	56.9	4.8e-18	62	108	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd+l++++v++ G++ W+ Ia+ ++ gR +kqc++rw+++l RcHm_v2.0_Chr1g0352951 62 KGFWSKEEDDLIIELVAKQGNKKWSEIAKSLP-GRIGKQCRERWHNHL 108 688***************************.***********97 PP
3	Myb_DNA-binding	52.6	1.1e-16	114	156	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r +WT eE+++l++ +k +G++ W+ Ia+ ++ gRt++++k++w+ RcHm_v2.0_Chr1g0352951 114 RTAWTNEEEKILIESHKAYGNK-WAEIAKLLP-GRTENSIKNHWN 156 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence
MTGPTRRSTK GGWTEEEDRI LADAVEKHNG KNWKRIAECV RGRTDVQCLH RWQKVLSPDL 60 VKGFWSKEED DLIIELVAKQ GNKKWSEIAK SLPGRIGKQC RERWHNHLNP DIKRTAWTNE 120 EEKILIESHK AYGNKWAEIA KLLPGRTENS IKNHWNCSVK KKLELRSFHI SNMESHKIKA 180 GVRKTEAVRQ SLDRIANFDK NVETCSINLD LVLGTPKGRE IQIKSLDKGN RGWLTKGAGA 240 DNMIKSSPSN LYYDRAAAAY GLNVEQRKEI YHNYGRLRDS HYLSAKQSIK ACTTSSCDLW 300 GFPYFHGKNH KPNHPMSLLN NCSDSFDYNR GAGNFLKKPD RPITVERLHE SCKVSQAYEE 360 TKDAGGATEH SEASNPGCLC YRPLQQEDLN YFLKNGEFPS TDSYIQTAFS SVSLCTPPSQ 420 DRGISVDCND PDSTLRSAAR TFKSSPSILR KRRHPISRQS LNSEHHYVIS EEISNNSRNS 480 LNILSPCGET KFHCMARSNV KKLFLSPQKS QKL

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence

MTGPTRRSTK GGWTEEEDRI LADAVEKHNG KNWKRIAECV RGRTDVQCLH RWQKVLSPDL  60
VKGFWSKEED DLIIELVAKQ GNKKWSEIAK SLPGRIGKQC RERWHNHLNP DIKRTAWTNE  120
EEKILIESHK AYGNKWAEIA KLLPGRTENS IKNHWNCSVK KKLELRSFHI SNMESHKIKA  180
GVRKTEAVRQ SLDRIANFDK NVETCSINLD LVLGTPKGRE IQIKSLDKGN RGWLTKGAGA  240
DNMIKSSPSN LYYDRAAAAY GLNVEQRKEI YHNYGRLRDS HYLSAKQSIK ACTTSSCDLW  300
GFPYFHGKNH KPNHPMSLLN NCSDSFDYNR GAGNFLKKPD RPITVERLHE SCKVSQAYEE  360
TKDAGGATEH SEASNPGCLC YRPLQQEDLN YFLKNGEFPS TDSYIQTAFS SVSLCTPPSQ  420
DRGISVDCND PDSTLRSAAR TFKSSPSILR KRRHPISRQS LNSEHHYVIS EEISNNSRNS  480
LNILSPCGET KFHCMARSNV KKLFLSPQKS QKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.1	4e-79	MYB family protein