PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0348781

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 467aa MW: 50434.5 Da PI: 8.7093

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0348781	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.9	1.2e-15	287	332	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq RcHm_v2.0_Chr1g0348781 287 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 332 9**********************8.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence
MSQCVPSWDL DDSSPPPRLS LRSHSNSTAP DVPMFDYEVA ELTWENGQVA MHGLGLPRLP 60 SKPASWDKPR ATGTLESIVN QATCTLPRFS KPPFDNTITS ATGGGANKVV TWFDHHCRVA 120 TSGAPSNTMT MDALVPCRNN QPDEPNSSLM IDSVDTVPGV LGSSGTGVIN GCSTRVGSCS 180 ATATHNEDTR RLGKHKAGVA RVPATPECRS PSVSGSATFG MDSQQATLDT KGSDRDSVCH 240 SRPQASSQAL LHKLMQKIMD NDEEERKKRS TGKSSVSTKR SRAAAIHNQS ERKRRDKINQ 300 RMKTLQKLVP NSSKTDKASM LDEVIEYLKQ LQAQVHVISR MNMPAMMLPM AMQQQLQMSM 360 MAPRNMGMGI GMGMGMGMGM DMNNIGRPNI GGVPPVLHPT AFMPMASWDG SACGAERLQA 420 ASTTVMPDPL PAFLACQSQP MTMDAYSMMA AMYQQFHQQP AASSSKS

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence

MSQCVPSWDL DDSSPPPRLS LRSHSNSTAP DVPMFDYEVA ELTWENGQVA MHGLGLPRLP  60
SKPASWDKPR ATGTLESIVN QATCTLPRFS KPPFDNTITS ATGGGANKVV TWFDHHCRVA  120
TSGAPSNTMT MDALVPCRNN QPDEPNSSLM IDSVDTVPGV LGSSGTGVIN GCSTRVGSCS  180
ATATHNEDTR RLGKHKAGVA RVPATPECRS PSVSGSATFG MDSQQATLDT KGSDRDSVCH  240
SRPQASSQAL LHKLMQKIMD NDEEERKKRS TGKSSVSTKR SRAAAIHNQS ERKRRDKINQ  300
RMKTLQKLVP NSSKTDKASM LDEVIEYLKQ LQAQVHVISR MNMPAMMLPM AMQQQLQMSM  360
MAPRNMGMGI GMGMGMGMGM DMNNIGRPNI GGVPPVLHPT AFMPMASWDG SACGAERLQA  420
ASTTVMPDPL PAFLACQSQP MTMDAYSMMA AMYQQFHQQP AASSSKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	291	296	ERKRRD
2	292	297	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	1e-84	bHLH family protein