PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0348121

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 297aa MW: 34069.9 Da PI: 9.4817

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0348121	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.9	1.2e-29	175	230	1	56
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES-- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeH 56 ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYeg+ RcHm_v2.0_Chr1g0348121 175 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGQF 230 59****************************************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence
MEGGHHRGVS NYDLHQQVSF SSSTPPAEQV IHHELGFVQF ENHHHHNQVL SFLAPSSAQQ 60 SQPPPQQQQQ QPSSHHHQTA AVNSSITVTT TAATNTNMGF SHSHDLVTRP SWNNNDQVGT 120 LDPKGVSDEN GTGNGSDCSN SWWRSSNSEK SKMKVRRKLR EPRFCFQTRS DVDVLDDGYK 180 WRKYGQKVVK NSLHPRSYYR CTHSNCRVKK RVERLSEDCR MVITTYEGQF HYLPSIEAVR 240 RYSTYWTPSN TNQALDFPAL TSKTLLLRTD NGWRKQIPCY SSCRYKIVVL LVHFLIL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	160	KVRRKLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44745.1	6e-59	WRKY family protein