PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0346571
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 311aa    MW: 34920.3 Da    PI: 4.6226
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0346571genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.37.5e-131156146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                            +g+W +eEde l++ vk+ G+++W++I ++  + Rt+k+c++rw +
  RcHm_v2.0_Chr1g0346571 11 KGPWKAEEDEVLLNHVKKCGPRDWSSIRSKGLLQRTGKSCRLRWVN 56
                            79*************************8887799**********87 PP
2Myb_DNA-binding43.66.8e-1467106344
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                             +++ eE+   +++ +q+G++ W++Ia +++ gRt++++k++w
  RcHm_v2.0_Chr1g0346571  67 KFSLEEERVVIELQAQFGNK-WAKIATHLP-GRTDNDVKNFW 106
                             799*****************.*********.*********** PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MEGKREEGIR KGPWKAEEDE VLLNHVKKCG PRDWSSIRSK GLLQRTGKSC RLRWVNKLRP  60
NLKNGCKFSL EEERVVIELQ AQFGNKWAKI ATHLPGRTDN DVKNFWSSRQ KRLARILQTS  120
TAAITPSKSH KNRREISVYH DEVPTLEIPK FSCSSEGESS SQAASCSSPC IGNSDAIQMV  180
PLPDLLDSKL LGFEANPVQQ ELALPENNLW IESQPLIPFL ENPQPQTDLE FSSDTQELLK  240
LDFDMFTSLD AELSKQLDVE PPFLEPVGSC GNVEGEKIDN PITPDCVFDD FPADMFDQIE  300
PLPNGSNPSD D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.18e-78MYB family protein