PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0344211 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | WOX | ||||||||
Protein Properties | Length: 106aa MW: 12388 Da PI: 5.1084 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 49.6 | 6.6e-16 | 47 | 106 | 3 | 56 |
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 +R+t+t +ql++L+el++ + p+ e+++e+ +l +++ ++V++WFqN +a+e+ RcHm_v2.0_Chr1g0344211 47 NRWTPTLDQLRILQELYYDkvLKSPTPEQIQEICLHLqqygQIEGKNVFFWFQNLKARER 106 7****************96679************************************98 PP | |||||||
2 | Wus_type_Homeobox | 92.4 | 4e-30 | 45 | 106 | 2 | 62 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRer 62 +++RWtPt +Q++iL+ely+ + l++P+ e+iq+i +L++yG+ie+kNVf+WFQN kaRer RcHm_v2.0_Chr1g0344211 45 TNNRWTPTLDQLRILQELYYdKVLKSPTPEQIQEICLHLQQYGQIEGKNVFFWFQNLKARER 106 679***************986889************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence |
MEPRTLQLME LQTQQQMELQ AQQPTEEGGS IQAAGSSANT PIRPTNNRWT PTLDQLRILQ 60 ELYYDKVLKS PTPEQIQEIC LHLQQYGQIE GKNVFFWFQN LKARER |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17950.1 | 6e-26 | WOX family protein |