PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0343281

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 312aa MW: 35777.8 Da PI: 7.8318

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0343281	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.1	5.1e-17	106	214	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...................tekerrtraetrtgCkaklkv 68 kfY+ Y++ +GFs+r++++ + r++ +++r++vCsk+gk++ + kk +++ r + +r+gC a + + RcHm_v2.0_Chr1g0343281 106 KFYHLYSRVIGFSTRRDRKVRAYRSEFVIRREWVCSKQGKATIKVKKqgvkekgkspiqaekkkmkRNQCPRGKRYSRVGCMAAFGI 192 6***************************************999999*******998766555556688999****** PP FAR1 69 kkek.dgkwevtkleleHnHel 89 + + ++k+ v+k+ ++HnH++ RcHm_v2.0_Chr1g0343281 193 RYCEeRKKYFVSKFITNHNHDV 214 999***************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence
MENNEAGLRC TDHLCHSLLP SDEEVSDDDC LLRIGEDKEG LFCDGGEKGL GQTSEIGNDK 60 CYMMDMETLE GTNVGECVDL NGKDYSNLNM DDMKDVVFSS VCEAEKFYHL YSRVIGFSTR 120 RDRKVRAYRS EFVIRREWVC SKQGKATIKV KKQGVKEKGK SPIQAEKKKM KRNQCPRGKR 180 YSRVGCMAAF GIRYCEERKK YFVSKFITNH NHDVAVSEEV QFLRSHRGVN DSVIAQVEAL 240 QKAQVHISRI YELLVEQAGG QQFLPFTLKD LYNELDKRKK AAGLDGDAHS AITWMQIRAL 300 EEKQFYCKYI ID

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-18	FAR1 family protein