PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0338881 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 229aa MW: 25758.5 Da PI: 11.0122 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.5 | 3.4e-09 | 23 | 69 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 rWT Ed+l+ +a ++ + +W++Ia++++ g++++++ +++ ++ RcHm_v2.0_Chr1g0338881 23 RWTRPEDKLFEQALVRFSDDlpdRWERIAEMVP-GKSAEEVLEHYETL 69 8*****************99*************.**********9875 PP | |||||||
2 | Myb_DNA-binding | 28.5 | 3.4e-09 | 134 | 170 | 11 | 47 |
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 l++ + kq+G+g+W++I+r + +Rt+ q+ s+ qky RcHm_v2.0_Chr1g0338881 134 LFLVGLKQFGKGDWRSISRNVVVTRTPTQVASHAQKY 170 79999*******************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence |
MFQEAAPPCW PAGVSQSTSS SARWTRPEDK LFEQALVRFS DDLPDRWERI AEMVPGKSAE 60 EVLEHYETLV HDVVEIDSGR VELRVTLMTR WSGGTRRVRS LLMVARITII AAAAVRRPRG 120 RRESRGLKLN TKLLFLVGLK QFGKGDWRSI SRNVVVTRTP TQVASHAQKY FLRQSSGKKE 180 RKRSSIHDIT SVETNSVPAP AERKWIPPPP PPPGDQGGSF GFPDFGFPK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 123 | RRPRGRRE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 4e-55 | MYB family protein |