PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0336861

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NF-YC

Protein Properties

Length: 349aa MW: 38020.3 Da PI: 4.7441

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0336861	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58.8	1.2e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki+++dedv +i+ +P l+ska elf+ +l r++ + + +t++ ++++v+ +fdfl div + RcHm_v2.0_Chr1g0336861 6 DTRFPAARIKKIMQTDEDVGKIALAVPLLVSKALELFLQDLCDRTYDITLKRGAKTMNSLHLKQCVKTFSVFDFLKDIVSK 86 5789**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MRKKLDTRFP AARIKKIMQT DEDVGKIALA VPLLVSKALE LFLQDLCDRT YDITLKRGAK 60 TMNSLHLKQC VKTFSVFDFL KDIVSKVPDL GGSDAVGEEC PVAKRRKVAA DDEDTESDDE 120 TKRGKMMNDA GNTVGSGRGR GRGRGRGRKA VADDEDTDTD DESKTSLMLH DAGNTIGSGR 180 GRGRGRGRPR GRPRGSRTGG KEISAPNEKY EDDLDIDKHE DKLDEPLELL DDATEPKGSK 240 ENASGGNSAE TAARNFDLNV DLNENEDSTT RSASVPVPGP GPVAAPAPVP VSVPVPVPAN 300 QSSQFTPDMK HVEFLGWPLT GMEKMAIDPM QLANLTRRID EEEEDYDED

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MRKKLDTRFP AARIKKIMQT DEDVGKIALA VPLLVSKALE LFLQDLCDRT YDITLKRGAK  60
TMNSLHLKQC VKTFSVFDFL KDIVSKVPDL GGSDAVGEEC PVAKRRKVAA DDEDTESDDE  120
TKRGKMMNDA GNTVGSGRGR GRGRGRGRKA VADDEDTDTD DESKTSLMLH DAGNTIGSGR  180
GRGRGRGRPR GRPRGSRTGG KEISAPNEKY EDDLDIDKHE DKLDEPLELL DDATEPKGSK  240
ENASGGNSAE TAARNFDLNV DLNENEDSTT RSASVPVPGP GPVAAPAPVP VSVPVPVPAN  300
QSSQFTPDMK HVEFLGWPLT GMEKMAIDPM QLANLTRRID EEEEDYDED

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	147	RGRGRGRGRG
2	138	148	RGRGRGRGRGR
3	180	190	RGRGRGRGRGR
4	182	192	RGRGRGRGRGR
5	184	194	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	4e-52	NF-YC family protein