PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0335301

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 880aa MW: 99279.5 Da PI: 6.6207

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0335301	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.8	9.5e-15	63	137	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 Y+eYA+++GF+ ++ +s++s+ +g++t r+fvC +eg ++++ ++ C+a+l+++ + ++w tk+++eH+H+ RcHm_v2.0_Chr1g0335301 63 LYDEYARRLGFNSKVGQSSRSNPDGTTTAREFVCGREGLKRRHADS--------------CDAMLRIESKGPDRWLATKFVKEHSHA 135 7************************************9998777..............************************* PP FAR1 89 la 90 l+ RcHm_v2.0_Chr1g0335301 136 LV 137 97 PP

Sequence ? help Back to Top
Protein Sequence Length: 880 aa Download sequence
MDVQVIDVPA VGHGGMGDEG DAERSEGGEV NNGENTQAHD EEGEIPEPYV GMEFHSEDAA 60 KNLYDEYARR LGFNSKVGQS SRSNPDGTTT AREFVCGREG LKRRHADSCD AMLRIESKGP 120 DRWLATKFVK EHSHALVSPG PVHYLRPRRH FAGAAKNVAE AYQGVGIVPS GVMYVSMDGN 180 RASGEKNRLV RNTSSAESNR QVKNAAAVNS IRPSTRRRTL GKDAQNLLEY FKKMQAANPG 240 FFYAIQLDED NHMGNVFWSD ARSRAAYSHF GDAVTLDTTY RVNQYRVPFA PFTGVNHHGQ 300 TILFGCALLL DESEASFIWL FKTFLTAMND CPPVSIMTDQ DRAIQTAVSQ VFPEVRHCIS 360 KWHVLREGQE RLAHVCHAHP NFQVELYNCI NLTETIEEFE LSWGCILDKY DLRRNDWLQS 420 LYSARAQWVP VYFRDSFFAT ISPNQGYDGS FFEGYVNQQT TLPMFFRQYE RALENWFERE 480 VEADFDTICT TPVLRTPSPM EKQAANLYTR KIFAKFQEEL VETFVYTANR IEGDGAISTF 540 RVAKFEDDHK AYIVTLNYPE MRANCSCQLF EYLGILCRHV LTVFTVTNVL TLPSHYILKR 600 WTRNAKNGTS LDERSGELHD QDSLTLRYNN LCREAIRYAE DGATTTETYN AAMTALRDGG 660 KKVSVVKRNV AKVAPPSSQV TGTGYEDKKN STSNSDMTPL LWPRQDEVMR RFNLNDAGAP 720 AQTVSDLNLP RMAPVSLLRD DGTPENMVVL PHLKSMTWVM ENKNSAPGNR VAVINLKLQD 780 YSRTPSAESE VKFQLSRVSL EPMLRSMAYI SDQLSTPANK VAVINLKLQD TETTTGESEV 840 KFQVSRDTLG AMLRSMAYIR EQLSTAGEVH SDSQPKKQRK

Sequence ? help Back to Top

Protein Sequence Length: 880 aa Download sequence

MDVQVIDVPA VGHGGMGDEG DAERSEGGEV NNGENTQAHD EEGEIPEPYV GMEFHSEDAA  60
KNLYDEYARR LGFNSKVGQS SRSNPDGTTT AREFVCGREG LKRRHADSCD AMLRIESKGP  120
DRWLATKFVK EHSHALVSPG PVHYLRPRRH FAGAAKNVAE AYQGVGIVPS GVMYVSMDGN  180
RASGEKNRLV RNTSSAESNR QVKNAAAVNS IRPSTRRRTL GKDAQNLLEY FKKMQAANPG  240
FFYAIQLDED NHMGNVFWSD ARSRAAYSHF GDAVTLDTTY RVNQYRVPFA PFTGVNHHGQ  300
TILFGCALLL DESEASFIWL FKTFLTAMND CPPVSIMTDQ DRAIQTAVSQ VFPEVRHCIS  360
KWHVLREGQE RLAHVCHAHP NFQVELYNCI NLTETIEEFE LSWGCILDKY DLRRNDWLQS  420
LYSARAQWVP VYFRDSFFAT ISPNQGYDGS FFEGYVNQQT TLPMFFRQYE RALENWFERE  480
VEADFDTICT TPVLRTPSPM EKQAANLYTR KIFAKFQEEL VETFVYTANR IEGDGAISTF  540
RVAKFEDDHK AYIVTLNYPE MRANCSCQLF EYLGILCRHV LTVFTVTNVL TLPSHYILKR  600
WTRNAKNGTS LDERSGELHD QDSLTLRYNN LCREAIRYAE DGATTTETYN AAMTALRDGG  660
KKVSVVKRNV AKVAPPSSQV TGTGYEDKKN STSNSDMTPL LWPRQDEVMR RFNLNDAGAP  720
AQTVSDLNLP RMAPVSLLRD DGTPENMVVL PHLKSMTWVM ENKNSAPGNR VAVINLKLQD  780
YSRTPSAESE VKFQLSRVSL EPMLRSMAYI SDQLSTPANK VAVINLKLQD TETTTGESEV  840
KFQVSRDTLG AMLRSMAYIR EQLSTAGEVH SDSQPKKQRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1 family protein