PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0331031

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 859aa MW: 97473.6 Da PI: 6.0996

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0331031	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.7	4.3e-14	67	141	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 Y++YA+ +GFs+ + + +++k +g i++ +f Cs+e +++++ ++ C+a+l+v++++ ++w+ tk+ ++HnH+ RcHm_v2.0_Chr1g0331031 67 LYEAYARCAGFSTHVGQFSRNKPDGPIVTWEFACSREVFKRKNVES--------------CNAMLRVERKDANTWVATKFIEDHNHS 139 6*************************************999877..............************************9 PP FAR1 89 la 90 + RcHm_v2.0_Chr1g0331031 140 ME 141 85 PP

Sequence ? help Back to Top
Protein Sequence Length: 859 aa Download sequence
MDTEVLADVE AEDRERHGTV DSESDKGVKQ NVNDSFAGRE IIVQDEDGNA KPYVGMEFES 60 EDAAKALYEA YARCAGFSTH VGQFSRNKPD GPIVTWEFAC SREVFKRKNV ESCNAMLRVE 120 RKDANTWVAT KFIEDHNHSM ESPNKVHYLR PRRHFAGATK NTAETLDVTS DAYVSMDGNP 180 VPYEPNRGGR SVSPVEQNRP ARNFGPTNYT RPSSRKRTLG RDAQNLLNYF KKMQAENPGF 240 YYAIQLDDDN RMTNVFWTDA RSRTAYNYFG DAVIFDTMYR PNQYQVPFAP FTGVNHHGQM 300 VLFGCALLLD ESESSFTWLF KTWLSAMNDR PPISITTDQD RAIQVAVAQV FPDARHCICK 360 WHILREGQER LAHIYLSNPS FYGELYSCIN FSETIEDFES SWVSILDRYD LRRNDWLQAV 420 YNARKQWAPV YFRGTFFAAI SSNQGVRSFF DGYVNQQTSV PLFFKQYERA LEHALEKEIE 480 ADYDTICTTP VLKTPSPMEQ QAASLYTKKV FSKFQEELVE TFVYTANKID GDGLASKYRV 540 AKYEHDDKAY IVELNVSEMK ASCSCQMFEY AGILCRHILT VFTVTNVLTL PSHYILKRWT 600 RNAKSWVGVD EQISDPQGVE ILTVRFNNLC QEAIKYAEEG AVAVETYNAA MIALRDSGKK 660 IADLKKNVAK VAPPSSQGSG SIQEENMKKA SLPFGELVPP LWPWQEALPH RFNLNDVGVP 720 VSDINQPSMA GSIQPDGGHP DNTVVYTCFK SMTWVIENKN STSAGKVAVI NLKLQDYRKN 780 PAGETDVQFR VTRVTLEPML RSMAYIGQQL SAPANRVAVI NLKLQDTNTT SGETEVKFQV 840 SRDTLDSMLR SMAYIREQL

Sequence ? help Back to Top

Protein Sequence Length: 859 aa Download sequence

MDTEVLADVE AEDRERHGTV DSESDKGVKQ NVNDSFAGRE IIVQDEDGNA KPYVGMEFES  60
EDAAKALYEA YARCAGFSTH VGQFSRNKPD GPIVTWEFAC SREVFKRKNV ESCNAMLRVE  120
RKDANTWVAT KFIEDHNHSM ESPNKVHYLR PRRHFAGATK NTAETLDVTS DAYVSMDGNP  180
VPYEPNRGGR SVSPVEQNRP ARNFGPTNYT RPSSRKRTLG RDAQNLLNYF KKMQAENPGF  240
YYAIQLDDDN RMTNVFWTDA RSRTAYNYFG DAVIFDTMYR PNQYQVPFAP FTGVNHHGQM  300
VLFGCALLLD ESESSFTWLF KTWLSAMNDR PPISITTDQD RAIQVAVAQV FPDARHCICK  360
WHILREGQER LAHIYLSNPS FYGELYSCIN FSETIEDFES SWVSILDRYD LRRNDWLQAV  420
YNARKQWAPV YFRGTFFAAI SSNQGVRSFF DGYVNQQTSV PLFFKQYERA LEHALEKEIE  480
ADYDTICTTP VLKTPSPMEQ QAASLYTKKV FSKFQEELVE TFVYTANKID GDGLASKYRV  540
AKYEHDDKAY IVELNVSEMK ASCSCQMFEY AGILCRHILT VFTVTNVLTL PSHYILKRWT  600
RNAKSWVGVD EQISDPQGVE ILTVRFNNLC QEAIKYAEEG AVAVETYNAA MIALRDSGKK  660
IADLKKNVAK VAPPSSQGSG SIQEENMKKA SLPFGELVPP LWPWQEALPH RFNLNDVGVP  720
VSDINQPSMA GSIQPDGGHP DNTVVYTCFK SMTWVIENKN STSAGKVAVI NLKLQDYRKN  780
PAGETDVQFR VTRVTLEPML RSMAYIGQQL SAPANRVAVI NLKLQDTNTT SGETEVKFQV  840
SRDTLDSMLR SMAYIREQL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1 family protein