PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0329681

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 559aa MW: 60418.1 Da PI: 4.7817

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0329681	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.1	1.7e-17	39	86	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lv++vk++G g+W+++ ++ g+ R++k+c++rw ++l RcHm_v2.0_Chr1g0329681 39 KGPWTSAEDAILVEYVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 86 79******************************************9986 PP
2	Myb_DNA-binding	53.4	6.1e-17	92	135	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ l+v++++++G++ W++ a++++ gRt++++k++w++ RcHm_v2.0_Chr1g0329681 92 KGAFTPEEERLIVELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 135 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 559 aa Download sequence
MSRTTTDSED GLLSKDQIES PLMDESNGGI GNGGIVLKKG PWTSAEDAIL VEYVKKHGEG 60 NWNAVQKHSG LFRCGKSCRL RWANHLRPNL KKGAFTPEEE RLIVELHAKM GNKWARMAAH 120 LPGRTDNEIK NYWNTRIKRR QRAGLPLYPP EVCLQALQES QQGQSSGALN GTDTAHHDSL 180 QTNSYEIPDV VFDSLKGNSC VLPYVPELPD ISASGMLMKG LGSSPYCGFM PPTMHRQKRP 240 RESTALFPTS GGSYKDGFPQ FDQFENDADR VARSYGLSFP HDPDPTTKSP LSFGVIQGSH 300 SLSNGNSSAS KPTCGAVKLE LPSLQYPETD LGSWSTSPPP PLLESIDNFI QSPPPVGAFE 360 SDCASPRNSG LLDALLYEAK TLGSTKNHST DKSSNSSSVT PGEVADSSTL NVCETEWEEY 420 GDPISPLGHS ATSLFSECTP ISASGSSLEE VPPAETLTGS NVKPEPADHA WTPEEQKEAS 480 PPLDYTRPDA LLGSDWLEPS TGFKDQSIMN DAIASLLGED LATDYKHMAS GTSTSNQGWG 540 LGSCPWNNMP AVCQMTDLP

Sequence ? help Back to Top

Protein Sequence Length: 559 aa Download sequence

MSRTTTDSED GLLSKDQIES PLMDESNGGI GNGGIVLKKG PWTSAEDAIL VEYVKKHGEG  60
NWNAVQKHSG LFRCGKSCRL RWANHLRPNL KKGAFTPEEE RLIVELHAKM GNKWARMAAH  120
LPGRTDNEIK NYWNTRIKRR QRAGLPLYPP EVCLQALQES QQGQSSGALN GTDTAHHDSL  180
QTNSYEIPDV VFDSLKGNSC VLPYVPELPD ISASGMLMKG LGSSPYCGFM PPTMHRQKRP  240
RESTALFPTS GGSYKDGFPQ FDQFENDADR VARSYGLSFP HDPDPTTKSP LSFGVIQGSH  300
SLSNGNSSAS KPTCGAVKLE LPSLQYPETD LGSWSTSPPP PLLESIDNFI QSPPPVGAFE  360
SDCASPRNSG LLDALLYEAK TLGSTKNHST DKSSNSSSVT PGEVADSSTL NVCETEWEEY  420
GDPISPLGHS ATSLFSECTP ISASGSSLEE VPPAETLTGS NVKPEPADHA WTPEEQKEAS  480
PPLDYTRPDA LLGSDWLEPS TGFKDQSIMN DAIASLLGED LATDYKHMAS GTSTSNQGWG  540
LGSCPWNNMP AVCQMTDLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	1e-141	MYB family protein