PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RcHm_v2.0_Chr1g0329321 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 155aa MW: 17619.4 Da PI: 9.4557 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 45.6 | 2.3e-14 | 51 | 92 | 49 | 90 |
FAR1 49 ekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 r++ra+tr gCka+++vk +k+gkw+++k+++eHnH+l+ RcHm_v2.0_Chr1g0329321 51 GPVRKPRASTREGCKAMIHVKYDKSGKWVIAKFVKEHNHSLV 92 56799**********************************996 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 155 aa Download sequence |
MKKEELIDCL GTIAQSGTSK FLTALKDLGA DNGLDDCLEE GHCVSIRGKF GPVRKPRAST 60 REGCKAMIHV KYDKSGKWVI AKFVKEHNHS LVVSPREARQ TMPDDKYEFS EPARIQSLVK 120 NYSQILVQLL TLWCKNLLSR SYQKMAWRLG YQGQE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G43280.1 | 4e-39 | FAR1 family protein |