PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0329051 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | WOX | ||||||||
Protein Properties | Length: 222aa MW: 24512.9 Da PI: 4.303 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 46.5 | 6.4e-15 | 31 | 91 | 3 | 57 |
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 + +t+t++ql++L+el++ + p+ e+++e+ +l ++++++V++WFqN +a+e++ RcHm_v2.0_Chr1g0329051 31 NQWTPTPDQLRILQELYYDkvLKCPTPEQIQEICLNLqqygQIEDKNVFFWFQNLKARERQ 91 57***************96679*************************************97 PP | |||||||
2 | Wus_type_Homeobox | 92.4 | 4e-30 | 30 | 92 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++ WtPtp+Q++iL+ely+ + l+ P+ e+iq+i +L++yG+iedkNVf+WFQN kaRerqk RcHm_v2.0_Chr1g0329051 30 NNQWTPTPDQLRILQELYYdKVLKCPTPEQIQEICLNLQQYGQIEDKNVFFWFQNLKARERQK 92 689**************9868899**************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence |
MELQAQQPTE EGGSIQAAGS SANTPIRPTN NQWTPTPDQL RILQELYYDK VLKCPTPEQI 60 QEICLNLQQY GQIEDKNVFF WFQNLKARER QKLREFRNVR VGGSLDLNFG STSSTDDGRS 120 IDLNFGSTGS TSTDRSIDLN FGSRVGYGVD GSIMEQRGEY HQEIETLPLF PMHGENVFGN 180 MKTTSEGGSG YGWYSGGWDD NNGGSCISLE LSLNSSGAAD MA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17950.1 | 1e-24 | WOX family protein |