PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0325171 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | WOX | ||||||||
Protein Properties | Length: 174aa MW: 19702.3 Da PI: 8.0917 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 50 | 5e-16 | 32 | 90 | 4 | 56 |
-SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 R+ +t++ +++L+el+ + p+ e+ ++++ +l +++ ++V++WFqN+Ra+ek RcHm_v2.0_Chr1g0325171 32 RWLPTTDHIRILKELYDDkgVKSPTVEQVQRITLQLkwygQIENKNVFYWFQNQRAREK 90 9****************6579*************************************9 PP | |||||||
2 | Wus_type_Homeobox | 91.1 | 1e-29 | 29 | 91 | 2 | 63 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerq 63 ++ RW Pt++ i+iL+ely+ +G+++P+ e++qrit +L+ yG+ie+kNVfyWFQN++aRe+ RcHm_v2.0_Chr1g0325171 29 SNIRWLPTTDHIRILKELYDdKGVKSPTVEQVQRITLQLKWYGQIENKNVFYWFQNQRAREKL 91 578****************999***************************************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence |
MEPQNWHPTE DGGSNKAAES CPNMHCKQSN IRWLPTTDHI RILKELYDDK GVKSPTVEQV 60 QRITLQLKWY GQIENKNVFY WFQNQRAREK LQKKKLTSDV QVPKQRSGLV GGSIMEQKGE 120 DHQEIKTLPL FPMHGEDIFG NMKTTSDEGG GHGGGSYISL ELSLSCEGKA GKIF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17950.1 | 2e-26 | WOX family protein |