PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0315931 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 332aa MW: 37289.5 Da PI: 6.5823 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.4 | 4.6e-15 | 29 | 76 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++ G g+W+ Iar g+ R++k+c++rw +yl RcHm_v2.0_Chr1g0315931 29 KGLWSPEEDEKLMRYMLSNGQGCWSDIARNSGLQRCGKSCRLRWINYL 76 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.5 | 4.1e-15 | 82 | 125 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+ l+++ + lG++ W+ Ia++++ gRt++++k++w++ RcHm_v2.0_Chr1g0315931 82 RGAFSPQEEHLIIHFHSILGNK-WSQIAARLP-GRTDNEIKNFWNS 125 89********************.*********.***********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence |
MRKPELSVGK DVKANSNSKN KMMNNKLRKG LWSPEEDEKL MRYMLSNGQG CWSDIARNSG 60 LQRCGKSCRL RWINYLRPDL KRGAFSPQEE HLIIHFHSIL GNKWSQIAAR LPGRTDNEIK 120 NFWNSALKKR LKNNNISTSA SSPNESDHSS EPNVNIGGAT PFIPMHNEHD MLMSMMYMDS 180 SSSSSSASMQ VINNSTFAPN FSVLDSSSLL NYVNHTGLTQ LPEAQYGDYG NYLEAGHKMG 240 IEGDLCLPHL ETSRRSLIEK NNGQVVDNLS NNNINHFHND NNNNCFTNTA SNMSFKVDDG 300 DIFEQAEAGG SSRVGEEWDF EGFMQDISCF LS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12870.1 | 3e-69 | MYB family protein |