PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0314891

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 431aa MW: 48073.3 Da PI: 8.3704

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0314891	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.6	3.5e-11	364	409	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l P+ +k + ae+Le+Ave+Ik+Lq RcHm_v2.0_Chr1g0314891 364 SIAERMRRTRISERMRKLQDLFPNM----DKQINTAEMLELAVEHIKDLQ 409 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MSSLLYSPNF KSSEAELRKN HAEFLDSSNS FQQQQSQQQQ SSGLMRYRSA PTSVLLDLVD 60 NNGDAVCEDF RDFRYPRPSS PEVETVLARF ISSCNAPETD NGSNNNAHHL FQGRPVKQEA 120 GDCVSKQSGY SNSPQMMYQT QQVHPLDNAS SFGAFKSTVL ENSMESKMGV GNRSNLVRQT 180 SSPAGFFPNL NVDNGFNLMK DASSFGVGNG TIGEASPSTS RLNTQFSFSS AASTPYSRES 240 RRLPRIAEIG NGNIGDVSEP DQSLGNATNG SISHYIPDYS NDTWDNSAFP DLKRGRDNDG 300 NKFSTTTALD TQNVDFGHRS YALTHHLSLP KHFEMPAMEK LLHFQDSIPC KIRAKRGFAT 360 HPRSIAERMR RTRISERMRK LQDLFPNMDK QINTAEMLEL AVEHIKDLQK QVKTLRDTKA 420 KCSCSSKQKH N

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MSSLLYSPNF KSSEAELRKN HAEFLDSSNS FQQQQSQQQQ SSGLMRYRSA PTSVLLDLVD  60
NNGDAVCEDF RDFRYPRPSS PEVETVLARF ISSCNAPETD NGSNNNAHHL FQGRPVKQEA  120
GDCVSKQSGY SNSPQMMYQT QQVHPLDNAS SFGAFKSTVL ENSMESKMGV GNRSNLVRQT  180
SSPAGFFPNL NVDNGFNLMK DASSFGVGNG TIGEASPSTS RLNTQFSFSS AASTPYSRES  240
RRLPRIAEIG NGNIGDVSEP DQSLGNATNG SISHYIPDYS NDTWDNSAFP DLKRGRDNDG  300
NKFSTTTALD TQNVDFGHRS YALTHHLSLP KHFEMPAMEK LLHFQDSIPC KIRAKRGFAT  360
HPRSIAERMR RTRISERMRK LQDLFPNMDK QINTAEMLEL AVEHIKDLQK QVKTLRDTKA  420
KCSCSSKQKH N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-48	bHLH family protein